Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 HMGB1P19-201ENST00000517578 577 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC012400.1-201ENST00000518452 381 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC022360.1-201ENST00000521058 340 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC013701.1-201ENST00000522657 465 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AP004607.2-201ENST00000533949 322 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC092490.3-201ENST00000545370 572 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 PCNPP1-201ENST00000552501 511 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC011840.5-201ENST00000582125 771 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXD4P09016 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 SNORA35B-201ENST00000607417 129 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AL109620.1-201ENST00000618738 1197 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXD4P09016 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXD4P09016 CDC27P2-201ENST00000425026 1922 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 CASC19-204ENST00000641001 2055 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXD4P09016 CASC19-281ENST00000642118 1554 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
HOXD4P09016 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXD4P09016 TTC39DP-201ENST00000416781 1688 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 AC245100.2-201ENST00000454544 1679 ntBASIC4.77□□□□□ -1.65
HOXD4P09016 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXD4P09016 SNORD56.6-201ENST00000384569 71 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 MIR105-1-201ENST00000385222 81 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AL035419.1-201ENST00000397037 564 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 DBIP1-201ENST00000401435 260 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 RPL12P43-201ENST00000420608 499 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 PA2G4P6-201ENST00000438325 1197 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AC073648.4-201ENST00000442655 781 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 Z80107.2-201ENST00000445127 392 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AL589765.3-201ENST00000446084 462 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 MORF4L1P4-201ENST00000450245 976 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 RPS29P22-201ENST00000472363 168 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AC022133.1-201ENST00000490961 571 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXD4P09016 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC040958.1-201ENST00000561102 201 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 AP000720.1-201ENST00000625091 483 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXD4P09016 CYP4F35P-202ENST00000636121 390 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC135068.12-201ENST00000637370 931 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HOXD4P09016 AC104623.2-202ENST00000623477 4002 ntBASIC4.76□□□□□ -1.65
HOXD4P09016 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXD4P09016 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXD4P09016 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXD4P09016 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXD4P09016 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 THAP12P4-201ENST00000528321 2266 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL034370.1-201ENST00000397254 1590 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 AC000123.3-201ENST00000624029 4975 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXD4P09016 RNU4-4P-201ENST00000364588 130 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 SNORA56-201ENST00000383966 129 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms