Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 SNORA16A-201ENST00000384342 137 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MIR141-201ENST00000384975 95 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 RPL26P29-201ENST00000415623 438 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AL360081.1-201ENST00000428299 555 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC007563.3-201ENST00000433233 371 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 KRT8P51-201ENST00000438938 274 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC009220.1-201ENST00000451614 275 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 RSU1P1-201ENST00000453416 441 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 FTH1P2-201ENST00000466086 412 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC020779.1-201ENST00000478757 796 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC105233.1-201ENST00000498840 781 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 snoU109.6-201ENST00000516831 118 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC063949.1-201ENST00000552900 865 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC092868.3-201ENST00000560515 784 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC068020.1-201ENST00000594215 661 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC130352.1-201ENST00000602979 661 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC009597.2-201ENST00000604659 592 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AL118556.2-201ENST00000614375 824 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AC091905.4-201ENST00000623432 202 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 HSPA8P14-201ENST00000552265 1805 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 RN7SKP104-201ENST00000362605 328 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 RNU1-74P-201ENST00000384108 171 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 RNA5SP87-201ENST00000384155 118 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AL589655.1-201ENST00000405398 482 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OR6C64P-201ENST00000419708 825 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC009127.1-201ENST00000467090 155 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC096741.1-201ENST00000472250 846 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC016550.3-201ENST00000515706 767 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC137768.1-201ENST00000549998 553 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 AL133481.2-203ENST00000607558 139 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 TMEM30CP-203ENST00000637814 1035 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHGA1Q9Y5H4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC138907.8-201ENST00000623981 2256 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 ADAM24P-201ENST00000398655 2101 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC018809.2-201ENST00000602436 3823 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms