Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SDC4P-201ENST00000453285 601 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 NDUFA12P1-201ENST00000455914 406 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AL161747.1-201ENST00000480068 358 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC133963.2-201ENST00000513686 578 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 SNORA19.3-201ENST00000516165 130 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AP001804.1-201ENST00000526868 919 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 CYB5AP5-201ENST00000549779 389 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 TVP23CP2-201ENST00000571473 623 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC084373.1-201ENST00000603311 235 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 ELOCP35-201ENST00000604289 336 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 MIR6758-201ENST00000620653 63 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC006963.1-201ENST00000624003 1052 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AC005225.5-201ENST00000623547 2225 ntBASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
SMC1BQ8NDV3 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 RPL32P3-201ENST00000359025 275 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 RNA5SP123-201ENST00000363244 119 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 RNU6-398P-201ENST00000384143 109 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL592310.1-201ENST00000414330 671 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 MTND2P16-201ENST00000419987 799 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC099063.2-201ENST00000446360 662 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC091163.3-201ENST00000518269 1144 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC106734.1-201ENST00000568646 663 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC068790.4-201ENST00000602474 263 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC025811.1-201ENST00000604312 472 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC104687.2-201ENST00000604442 342 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 SUMO2P14-201ENST00000604488 293 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC097478.2-201ENST00000610572 514 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL161616.1-201ENST00000611867 286 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AL031658.2-201ENST00000616850 651 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC009120.7-201ENST00000623452 780 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 AC092159.4-201ENST00000624944 550 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms