Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
NUP54Q7Z3B4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 RN7SKP269-201ENST00000365545 319 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC019155.1-201ENST00000382242 574 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 OR3A2-201ENST00000408891 1076 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AL357078.2-201ENST00000416486 427 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC019050.1-201ENST00000418508 492 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 RPS26P4-201ENST00000431743 355 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC092106.1-201ENST00000444291 373 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 PPIAP20-201ENST00000449839 135 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 RN7SL583P-201ENST00000475692 287 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 EIF1P7-201ENST00000487533 337 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC090638.1-201ENST00000498296 909 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC021106.1-201ENST00000509020 1058 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 SMARCE1P4-201ENST00000523647 241 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC090948.2-201ENST00000607363 564 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 FAM72A-208ENST00000607379 1139 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AL162574.1-201ENST00000615702 950 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AL118522.2-201ENST00000616045 615 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC106730.3-201ENST00000624568 641 ntBASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP54Q7Z3B4 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC068870.1-201ENST00000563737 2455 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC114546.3-201ENST00000623582 1734 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC079097.1-201ENST00000512187 1399 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC112198.2-201ENST00000426589 6996 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC092451.3-201ENST00000625067 1343 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 PCAT14-202ENST00000627127 3935 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 RN7SKP145-201ENST00000363291 303 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 RNA5SP132-201ENST00000364725 118 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 SNORD115-48-201ENST00000364764 76 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 SNORA48.4-201ENST00000391089 134 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AC073136.2-201ENST00000417282 849 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 AL121878.1-201ENST00000418638 859 ntBASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.06□□□□□ -1.6
NUP54Q7Z3B4 MTND4P24-201ENST00000424002 397 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms