Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NPM1P29-201ENST00000483112 803 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 SLC25A15P5-201ENST00000508033 253 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 MTCYBP19-201ENST00000517463 1124 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 MTND5P21-201ENST00000531961 522 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC090424.1-201ENST00000535243 736 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AL020997.2-201ENST00000602607 184 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC087783.2-201ENST00000605070 562 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 AC012414.7-202ENST00000622705 1090 ntBASIC5.36□□□□□ -1.55
COL28A1Q2UY09 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL28A1Q2UY09 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 U3.2-201ENST00000362981 210 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 U3.10-201ENST00000364459 214 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 RNU4-7P-201ENST00000364758 141 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 RNU4-2-201ENST00000365668 141 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 RNU6-1263P-201ENST00000384601 106 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 NPM1P18-201ENST00000434232 732 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC073410.1-201ENST00000435125 589 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 PRPF38AP2-201ENST00000438179 851 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC015983.1-201ENST00000441577 373 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AL450023.1-201ENST00000450868 751 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC069277.2-201ENST00000454211 432 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 RNU1-88P-201ENST00000459274 128 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC079080.1-201ENST00000479841 822 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC091544.1-201ENST00000484702 348 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC008897.1-201ENST00000494006 347 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 SNRPCP2-201ENST00000504370 475 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC021678.3-201ENST00000517893 476 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 OR5AZ1P-201ENST00000527448 943 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC004923.2-201ENST00000529649 369 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 TOMM20P2-201ENST00000540082 421 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC063949.1-201ENST00000552900 865 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AL110118.1-201ENST00000553543 400 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 MIR4433B-201ENST00000581329 102 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 BNIP3P27-201ENST00000599991 412 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 MTATP6P2-201ENST00000603319 678 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AP001033.2-201ENST00000609701 1003 ntBASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 AC007342.7-201ENST00000624610 2337 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms