Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.73□□□□□ -1.65
LIM2P55344 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIM2P55344 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.73□□□□□ -1.65
LIM2P55344 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
LIM2P55344 AC011447.7-201ENST00000624228 1590 ntBASIC4.73□□□□□ -1.65
LIM2P55344 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.73□□□□□ -1.65
LIM2P55344 AC007996.1-201ENST00000620414 2821 ntBASIC4.73□□□□□ -1.65
LIM2P55344 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 SNORA70-201ENST00000384436 135 ntBASIC4.72□□□□□ -1.65
LIM2P55344 CHMP1B2P-201ENST00000399581 597 ntBASIC4.72□□□□□ -1.65
LIM2P55344 Z97832.1-201ENST00000402490 328 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.72□□□□□ -1.65
LIM2P55344 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
LIM2P55344 AC013429.2-201ENST00000418798 781 ntBASIC4.72□□□□□ -1.65
LIM2P55344 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.72□□□□□ -1.65
LIM2P55344 AL138787.1-202ENST00000437804 898 ntBASIC4.72□□□□□ -1.65
LIM2P55344 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.72□□□□□ -1.65
LIM2P55344 AL356981.1-201ENST00000454879 684 ntBASIC4.72□□□□□ -1.65
LIM2P55344 RPS17P2-201ENST00000461663 408 ntBASIC4.72□□□□□ -1.65
LIM2P55344 RN7SL515P-201ENST00000463999 297 ntBASIC4.72□□□□□ -1.65
LIM2P55344 SEPT7P6-201ENST00000469999 1143 ntBASIC4.72□□□□□ -1.65
LIM2P55344 RPL37AP8-201ENST00000494116 276 ntBASIC4.72□□□□□ -1.65
LIM2P55344 HMGB3P14-201ENST00000494195 599 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AC023424.1-201ENST00000496058 459 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.72□□□□□ -1.65
LIM2P55344 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.72□□□□□ -1.65
LIM2P55344 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.72□□□□□ -1.65
LIM2P55344 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 NPM1P45-201ENST00000583151 559 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AL583832.1-201ENST00000603227 784 ntBASIC4.72□□□□□ -1.65
LIM2P55344 MEMO1P5-201ENST00000604810 406 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AC005377.1-201ENST00000605126 456 ntBASIC4.72□□□□□ -1.65
LIM2P55344 EIF3FP1-201ENST00000613970 806 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AC015914.2-201ENST00000618167 288 ntBASIC4.72□□□□□ -1.65
LIM2P55344 AC245100.2-201ENST00000454544 1679 ntBASIC4.72□□□□□ -1.65
LIM2P55344 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.72□□□□□ -1.65
LIM2P55344 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.72□□□□□ -1.65
LIM2P55344 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.72□□□□□ -1.65
LIM2P55344 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIM2P55344 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
LIM2P55344 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.71□□□□□ -1.65
LIM2P55344 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.71□□□□□ -1.65
LIM2P55344 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
LIM2P55344 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
LIM2P55344 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.71□□□□□ -1.65
LIM2P55344 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 ECM1P2-201ENST00000503354 1577 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 AL136116.2-201ENST00000404020 785 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.71□□□□□ -1.66
LIM2P55344 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 AL121878.1-201ENST00000418638 859 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AL034379.1-201ENST00000423216 253 ntBASIC4.71□□□□□ -1.66
LIM2P55344 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AL590399.4-201ENST00000436561 601 ntBASIC4.71□□□□□ -1.66
LIM2P55344 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 AL137845.2-201ENST00000444292 988 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.71□□□□□ -1.66
LIM2P55344 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 RN7SL319P-201ENST00000480656 221 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.71□□□□□ -1.66
LIM2P55344 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.71□□□□□ -1.66
LIM2P55344 AGGF1P9-201ENST00000561884 913 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AC116553.2-201ENST00000564203 463 ntBASIC4.71□□□□□ -1.66
LIM2P55344 MIR4472-2-201ENST00000582069 67 ntBASIC4.71□□□□□ -1.66
LIM2P55344 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.71□□□□□ -1.66
LIM2P55344 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.71□□□□□ -1.66
LIM2P55344 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
LIM2P55344 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 AC010266.2-201ENST00000564741 3255 ntBASIC4.71□□□□□ -1.66
LIM2P55344 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.71□□□□□ -1.66
LIM2P55344 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIM2P55344 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms