Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
FOXA1P55317 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
FOXA1P55317 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 TLK1P1-201ENST00000456760 2440 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 AL021331.1-201ENST00000402817 582 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 RN7SKP229-201ENST00000410465 302 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 RN7SKP125-201ENST00000410481 302 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA1P55317 RPS17P8-201ENST00000434525 335 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA1P55317 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.64□□□□□ -1.67
FOXA1P55317 RPS26P39-201ENST00000469206 341 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 RPL23AP37-201ENST00000479658 549 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA1P55317 RPL37AP8-201ENST00000494116 276 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 RPS4XP18-201ENST00000495480 763 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 BTG4P1-201ENST00000510421 183 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC079075.1-201ENST00000559543 878 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC007448.1-201ENST00000582714 234 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AP000919.1-201ENST00000582850 985 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC006116.3-201ENST00000592968 361 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.64□□□□□ -1.67
FOXA1P55317 AL121932.1-201ENST00000605542 214 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC022467.1-201ENST00000614738 749 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 AC241377.1-201ENST00000619797 406 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
FOXA1P55317 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
FOXA1P55317 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 SMG1P6-201ENST00000532337 2930 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA1P55317 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
FOXA1P55317 AC099654.2-201ENST00000433031 1980 ntBASIC4.64□□□□□ -1.67
FOXA1P55317 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA1P55317 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 AL132656.3-201ENST00000606384 1595 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 U8.4-201ENST00000363626 134 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AL080315.1-201ENST00000406055 466 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA1P55317 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA1P55317 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 RPS26P2-201ENST00000440331 348 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 RN7SL214P-201ENST00000487317 265 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 RNA5SP92-201ENST00000516437 110 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 SCARNA21.2-201ENST00000516600 166 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
FOXA1P55317 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.63□□□□□ -1.67
FOXA1P55317 MORF4L1P3-201ENST00000525966 950 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.63□□□□□ -1.67
FOXA1P55317 AC130352.1-201ENST00000602979 661 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 AC007497.1-201ENST00000610421 561 ntBASIC4.63□□□□□ -1.67
FOXA1P55317 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
FOXA1P55317 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA1P55317 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.63□□□□□ -1.67
FOXA1P55317 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 MTCO1P11-201ENST00000429111 1528 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
FOXA1P55317 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
FOXA1P55317 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
FOXA1P55317 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms