Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.4□□□□□ -1.54
LIMK1P53667 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.4□□□□□ -1.54
LIMK1P53667 AC012414.2-201ENST00000559474 187 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.4□□□□□ -1.54
LIMK1P53667 AC106730.2-201ENST00000566641 540 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 MIR4311-201ENST00000580794 100 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.4□□□□□ -1.54
LIMK1P53667 AP005131.7-201ENST00000610087 611 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 AC104307.1-201ENST00000616142 196 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 RMST_5.1-201ENST00000618704 126 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 AC012414.7-202ENST00000622705 1090 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 AC016717.3-201ENST00000624730 554 ntBASIC5.4□□□□□ -1.54
LIMK1P53667 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.4□□□□□ -1.54
LIMK1P53667 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.4□□□□□ -1.55
LIMK1P53667 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.4□□□□□ -1.55
LIMK1P53667 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 AC092376.2-201ENST00000622621 4116 ntBASIC5.4□□□□□ -1.55
LIMK1P53667 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIMK1P53667 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMK1P53667 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMK1P53667 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
LIMK1P53667 MFSD8-239ENST00000641590 2479 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC006206.1-201ENST00000544842 3387 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIMK1P53667 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIMK1P53667 RNU6-1251P-201ENST00000364502 107 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 RNU6-883P-201ENST00000384597 107 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 SNORD65-201ENST00000391079 73 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 AMZ2P2-201ENST00000406819 1057 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 RNU2-50P-201ENST00000410494 143 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC211486.3-201ENST00000412694 621 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMK1P53667 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 PRPF38AP2-201ENST00000438179 851 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 MTND2P3-201ENST00000452458 470 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC083899.1-201ENST00000454465 3819 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 RPL12P39-201ENST00000455456 496 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC020779.1-201ENST00000478757 796 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC105384.2-201ENST00000508433 640 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 IGKV2D-10-201ENST00000520194 281 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC138832.1-201ENST00000522871 556 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 TOMM20P2-201ENST00000540082 421 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.39□□□□□ -1.55
LIMK1P53667 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC011487.3-201ENST00000593607 453 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC109583.2-201ENST00000617367 129 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 AC091905.4-201ENST00000623432 202 ntBASIC5.39□□□□□ -1.55
LIMK1P53667 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
LIMK1P53667 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIMK1P53667 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
LIMK1P53667 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
LIMK1P53667 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
LIMK1P53667 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 PCAT14-202ENST00000627127 3935 ntBASIC5.38□□□□□ -1.55
LIMK1P53667 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.38□□□□□ -1.55
LIMK1P53667 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.38□□□□□ -1.55
LIMK1P53667 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
LIMK1P53667 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIMK1P53667 RNA5SP123-201ENST00000363244 119 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms