Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF225-206ENST00000592780 2538 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 CYB5D1-201ENST00000332439 3509 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 XPOTP1-201ENST00000443317 2398 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC104825.2-201ENST00000505448 3249 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 SOD2P1-201ENST00000396543 562 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AL139396.1-201ENST00000421137 167 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 TRAPPC2P3-201ENST00000443200 321 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AL161722.1-201ENST00000446972 1032 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC093166.3-201ENST00000448785 303 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 RPL23P10-201ENST00000468780 412 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 RN7SL861P-201ENST00000473793 285 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 RN7SL177P-201ENST00000476596 299 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC091849.1-201ENST00000509920 121 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 LIAS-206ENST00000513731 826 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 RNU6-408P-201ENST00000515910 100 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 AP001804.3-201ENST00000525146 880 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 OR5BK1P-201ENST00000550421 823 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC079313.2-202ENST00000552053 511 ntTSL 3 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC7.89□□□□□ -1.15
COL9A1P20849 RN7SL473P-201ENST00000580341 299 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC108451.2-201ENST00000603875 538 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 ATP1B3P1-201ENST00000605365 821 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC018926.3-201ENST00000618841 406 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 OR52H1-202ENST00000641796 1061 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 PNPT1P2-201ENST00000456768 2050 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 AC105101.1-201ENST00000623698 2873 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 AL365475.1-201ENST00000565135 1949 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC107419.1-201ENST00000422048 1879 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 PAX6-282ENST00000640975 2553 ntAPPRIS P4 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 SCMH1-210ENST00000402904 3204 ntTSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 ACTR6-201ENST00000188312 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 MGC15885-201ENST00000558940 2425 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 CCT8P1-201ENST00000413611 1657 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 ZNF45-206ENST00000615985 2912 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 ZCCHC11-204ENST00000371544 5858 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 VPS35P1-201ENST00000563400 1518 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 OR7E11P-202ENST00000642027 1491 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 STXBP5-AS1-209ENST00000606831 2025 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 AL137058.3-201ENST00000624531 3099 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 PDE4D-208ENST00000502484 2478 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 AC106869.1-203ENST00000419035 1892 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 C2CD5-218ENST00000545552 3471 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 EIF4E2-202ENST00000409098 3448 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 PAX8-AS1-201ENST00000333145 2319 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 AOAH-208ENST00000612871 2336 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 RNU6-522P-201ENST00000364497 107 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 RNU4-66P-201ENST00000365199 138 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 Y_RNA.482-201ENST00000384377 111 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 MIR187-201ENST00000385062 109 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 RNA5SP185-201ENST00000390963 114 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 RNU1-56P-201ENST00000391303 164 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 MIR937-201ENST00000401271 86 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AL139397.2-201ENST00000404529 772 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC7.88□□□□□ -1.15
COL9A1P20849 PCNPP5-201ENST00000452246 481 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 RNU7-136P-201ENST00000458819 69 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC015724.1-201ENST00000478577 156 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 RPL7P51-201ENST00000490532 749 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 GAPDHP61-201ENST00000507324 1005 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC087854.1-201ENST00000519706 414 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC008708.2-201ENST00000522956 1124 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms