Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AP000619.2-201ENST00000546014 969 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC025918.2-201ENST00000558683 763 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC124856.1-201ENST00000600819 896 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AL353778.1-201ENST00000603149 408 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AC104785.1-201ENST00000603220 588 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AC121247.2-201ENST00000604776 136 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AC135507.1-201ENST00000607214 561 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 MIR6820-201ENST00000611508 62 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AL121612.2-201ENST00000612261 482 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC090617.9-201ENST00000623751 147 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AL390318.1-201ENST00000624564 687 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
COL6A1P12109 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 MTND4P10-201ENST00000446199 1363 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 OLMALINC-203ENST00000641087 3779 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 AC112243.1-201ENST00000623949 3851 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 CASC19-281ENST00000642118 1554 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 MRE11P1-201ENST00000464884 2127 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 AC007938.2-201ENST00000604666 2634 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC005034.3-201ENST00000604845 1747 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 TNPO1P2-201ENST00000426249 2665 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 U8.4-201ENST00000363626 134 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 SNORD116-4-201ENST00000384733 96 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 MIR765-201ENST00000390226 114 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 PRELID3BP10-201ENST00000431957 584 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AL606490.7-201ENST00000433136 191 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 PSMD10P3-201ENST00000437000 448 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 CYCSP12-201ENST00000437729 300 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 RPS27AP3-201ENST00000453803 454 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 CBX1P2-201ENST00000453841 458 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 RPSAP50-201ENST00000481955 852 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 RPS3AP22-201ENST00000488297 769 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC009120.1-201ENST00000493458 473 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC023818.1-201ENST00000498379 384 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.51□□□□□ -1.37
COL6A1P12109 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.51□□□□□ -1.37
COL6A1P12109 OR5BM1P-201ENST00000512021 366 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 SCARNA6.1-201ENST00000516989 238 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC079064.1-201ENST00000528365 362 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 AP003717.3-201ENST00000544832 1180 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 CYB5AP5-201ENST00000549779 389 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.51□□□□□ -1.37
COL6A1P12109 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.51□□□□□ -1.37
COL6A1P12109 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 AC005034.4-201ENST00000603612 899 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AL133507.1-201ENST00000605269 557 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AL021368.3-201ENST00000607119 578 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.51□□□□□ -1.37
COL6A1P12109 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 MIR6810-201ENST00000622701 70 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL6A1P12109 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL6A1P12109 AC119674.1-213ENST00000641177 1386 ntBASIC6.51□□□□□ -1.37
COL6A1P12109 AL391261.1-201ENST00000555712 1479 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms