Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RPL31P44-201ENST00000447680 377 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 NDUFA5P8-201ENST00000449019 346 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 TPT1P13-201ENST00000449760 499 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 Z92846.1-201ENST00000456203 268 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC092324.1-201ENST00000468671 324 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC004980.4-201ENST00000513375 203 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 snoU109.5-201ENST00000516231 132 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 GSTP1P1-201ENST00000548078 319 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC127381.1-201ENST00000555979 939 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AC019322.1-201ENST00000571869 389 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AL137072.1-201ENST00000603444 466 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 HIRAP1-201ENST00000605318 787 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 BX322635.1-201ENST00000605804 496 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 MIR6810-201ENST00000622701 70 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AP003499.2-201ENST00000624100 483 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AL078621.3-201ENST00000623707 2042 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 CASC19-284ENST00000642142 1868 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 AL355488.2-201ENST00000609909 2850 ntBASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PCDHGA1Q9Y5H4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
PCDHGA1Q9Y5H4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
PCDHGA1Q9Y5H4 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 THAP12P4-201ENST00000528321 2266 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 INTS6P1-201ENST00000504674 2530 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PCAT14-202ENST00000627127 3935 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AL138820.1-201ENST00000617901 5305 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 SNORA51.8-201ENST00000384234 132 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AL354766.1-201ENST00000423396 542 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AL035551.1-201ENST00000446931 348 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 RPS3AP53-201ENST00000454716 778 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 RPL7P40-201ENST00000481703 745 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 IMPA1P1-201ENST00000510718 842 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 EIF3KP3-201ENST00000514461 639 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 RFPL4AP5-201ENST00000514977 504 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 MTCYBP19-201ENST00000517463 1124 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AC026616.1-201ENST00000523157 525 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AC011487.3-201ENST00000593607 453 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AF230666.2-201ENST00000602328 725 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 EIF3FP1-201ENST00000613970 806 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AL356274.1-201ENST00000617064 410 ntBASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
PCDHGA1Q9Y5H4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 AL603750.1-201ENST00000624216 1717 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 BTBD10P1-201ENST00000549824 1352 ntBASIC5.2□□□□□ -1.58
PCDHGA1Q9Y5H4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms