Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP002530.1-201ENST00000405705 684 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 CHEK2P3-201ENST00000416118 248 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 RPS26P13-201ENST00000419030 330 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 MRPS21P2-201ENST00000424704 264 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC006455.6-201ENST00000426192 893 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AL392003.1-201ENST00000434394 243 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 RPL7P11-201ENST00000437586 658 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 RAD1P2-201ENST00000446414 663 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 MTND6P32-201ENST00000457611 483 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC011840.5-201ENST00000582125 771 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AL022394.1-201ENST00000606979 292 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC004817.4-201ENST00000602396 3625 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC092376.2-201ENST00000622621 4116 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 AC003985.2-201ENST00000562268 1669 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 SNORA51.8-201ENST00000384234 132 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AL136116.2-201ENST00000404020 785 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 RN7SKP125-201ENST00000410481 302 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AL445213.1-201ENST00000412589 747 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 OR2AM1P-201ENST00000422137 422 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AL590762.4-201ENST00000425885 253 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 VN1R54P-201ENST00000435210 1049 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 PA2G4P6-201ENST00000438325 1197 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC021660.1-201ENST00000465006 554 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 RN7SL319P-201ENST00000480656 221 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 NDUFB5P1-201ENST00000508134 564 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 RN7SKP34-201ENST00000516142 244 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 RNU6-751P-201ENST00000516382 101 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC073575.2-201ENST00000614212 627 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC087385.3-201ENST00000620477 187 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AC131971.1-201ENST00000332881 1482 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 ADAM5-202ENST00000399789 1942 ntBASIC5.05□□□□□ -1.6
LHX3Q9UBR4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.05□□□□□ -1.6
LHX3Q9UBR4 AP005432.1-201ENST00000580891 3485 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 MIR365B-201ENST00000362317 111 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC013442.1-201ENST00000397347 228 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 Z97832.1-201ENST00000402490 328 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC117434.1-201ENST00000419971 836 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC093414.1-201ENST00000434712 514 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.04□□□□□ -1.6
LHX3Q9UBR4 SCAND3P1-201ENST00000439854 1060 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 SUMO2P1-206ENST00000445436 284 ntBASIC5.04□□□□□ -1.6
LHX3Q9UBR4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms