Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 OR5H3P-201ENST00000502817 919 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 snoU109.5-201ENST00000516231 132 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC021678.3-201ENST00000517893 476 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC139365.2-201ENST00000517972 253 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 HMGB1P42-201ENST00000532126 553 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC135279.1-201ENST00000543493 504 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 DUX4L52-201ENST00000549363 777 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC018552.1-201ENST00000562099 811 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 DPPA2P4-201ENST00000563717 878 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AP005262.1-201ENST00000582646 997 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AL160237.3-201ENST00000604114 1013 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AL022394.1-201ENST00000606979 292 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AL157392.4-201ENST00000609756 345 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 RNA5SP440-201ENST00000612665 119 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC022467.1-201ENST00000614738 749 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC006927.2-201ENST00000639256 389 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 PCAT14-202ENST00000627127 3935 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 AL022311.1-201ENST00000623726 19416 ntBASIC5.81□□□□□ -1.48
DKK3Q9UBP4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
DKK3Q9UBP4 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AL159987.1-201ENST00000347911 293 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RNA5SP187-201ENST00000384400 119 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 TAF9BP2-201ENST00000400856 499 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RN7SKP293-201ENST00000411389 296 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 BMS1P17-202ENST00000416720 316 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 NANOGP5-201ENST00000424456 877 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 VN1R42P-201ENST00000424651 344 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 HMGB3P24-201ENST00000433260 622 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC245047.2-201ENST00000441060 530 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RPSAP37-201ENST00000470913 821 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 OR7E157P-201ENST00000494376 911 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC105384.2-201ENST00000508433 640 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RNU6-615P-201ENST00000516065 106 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RN7SKP34-201ENST00000516142 244 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 RNU6-311P-201ENST00000516224 102 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC078899.1-201ENST00000521432 1185 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC138832.1-201ENST00000522871 556 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC018442.3-201ENST00000523025 183 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC068993.1-201ENST00000546724 589 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 MTCYBP27-201ENST00000555160 670 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC096996.1-201ENST00000563813 325 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 MIR4700-201ENST00000578311 74 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AP000919.1-202ENST00000581139 1264 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC040904.1-201ENST00000590850 223 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC005034.4-201ENST00000603612 899 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC106052.1-201ENST00000608029 497 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 SDR42E1P1-201ENST00000611327 477 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC026422.1-201ENST00000623961 452 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 AC017104.5-201ENST00000637647 639 ntBASIC5.8□□□□□ -1.48
DKK3Q9UBP4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms