Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC011504.1-201ENST00000623331 4103 ntBASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.18□□□□□ -1.42
TRIM39Q9HCM9 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL133243.2-201ENST00000610331 1621 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 RN7SKP149-201ENST00000363008 344 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MIR433-201ENST00000384837 93 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 RNU6-575P-201ENST00000411326 105 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MRPS36P1-201ENST00000421291 307 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL354707.3-201ENST00000427308 331 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL035407.1-201ENST00000429211 571 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 RPSAP65-201ENST00000429660 595 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC009961.3-201ENST00000449832 765 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MTND3P7-201ENST00000474435 343 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 VPS26AP1-201ENST00000483197 979 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC117532.1-201ENST00000514638 323 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AP005639.1-201ENST00000526939 192 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 DPRXP4-201ENST00000578053 568 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MIR4502-201ENST00000580432 81 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 MIR4271-201ENST00000582451 67 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AP005136.2-201ENST00000583253 1049 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 DYNLL1P1-201ENST00000595442 269 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC006539.2-201ENST00000601729 572 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC124916.2-201ENST00000604416 224 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 OR2AS2P-201ENST00000606902 342 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL031658.2-201ENST00000616850 651 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AL359757.1-201ENST00000623176 255 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC073488.6-201ENST00000632293 754 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC011369.2-201ENST00000624423 1567 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AC119674.1-213ENST00000641177 1386 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 AP000776.1-201ENST00000530032 1663 ntBASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRIM39Q9HCM9 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 SGO1P1-201ENST00000603525 1447 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 AL121839.2-201ENST00000565058 6943 ntBASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
TRIM39Q9HCM9 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms