Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 RN7SKP28-201ENST00000364770 305 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 MIR130A-201ENST00000385274 89 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC105402.1-201ENST00000413336 545 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 NPM1P24-201ENST00000428039 894 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL160175.1-201ENST00000428124 247 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 EEF1B2P6-201ENST00000445713 673 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 RN7SL174P-201ENST00000475578 289 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 MTND6P6-201ENST00000478031 263 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 RN7SL717P-201ENST00000478343 297 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 HMGB1P46-201ENST00000520062 610 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC022404.1-201ENST00000555320 273 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL049872.1-201ENST00000556323 322 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 MIR4505-201ENST00000582238 73 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 MTCO3P22-201ENST00000603219 784 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC005229.3-201ENST00000603438 323 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC007683.2-201ENST00000624681 714 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 AL355480.1-201ENST00000629041 99 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.3□□□□□ -1.56
VMP1Q96GC9 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 CYP1D1P-201ENST00000416662 1433 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC063976.2-201ENST00000425667 3556 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VMP1Q96GC9 AC112198.2-201ENST00000426589 6996 ntBASIC5.3□□□□□ -1.56
VMP1Q96GC9 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC091046.3-201ENST00000631455 1574 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC073136.1-201ENST00000449426 2884 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 RNA5SP30-201ENST00000365552 115 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL512422.1-201ENST00000407033 553 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 RN7SKP206-201ENST00000410823 293 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 RANP4-201ENST00000413361 655 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL133482.1-201ENST00000415988 498 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL359265.1-201ENST00000440296 795 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL450996.1-201ENST00000445574 1202 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 HMGB1P26-201ENST00000452520 628 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC023141.9-201ENST00000458734 412 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 DUTP1-201ENST00000493631 470 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC106872.4-201ENST00000510050 523 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC020978.7-201ENST00000575953 1187 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC090525.3-201ENST00000605601 189 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC100814.1-201ENST00000606963 623 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AL691477.1-201ENST00000624398 162 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 NEAT1-202ENST00000501122 22743 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms