Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 ELF2P3-201ENST00000445099 1506 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 AC016716.1-201ENST00000265882 708 ntBASIC6.22□□□□□ -1.41
RNF4P78317 RPL21P132-201ENST00000331267 462 ntBASIC6.22□□□□□ -1.41
RNF4P78317 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
RNF4P78317 RNA5SP308-201ENST00000362532 115 ntBASIC6.22□□□□□ -1.41
RNF4P78317 SNORA7A-201ENST00000384765 139 ntBASIC6.22□□□□□ -1.41
RNF4P78317 MIR551B-201ENST00000384984 96 ntBASIC6.22□□□□□ -1.41
RNF4P78317 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 MIR541-201ENST00000401360 84 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL359694.1-201ENST00000403247 604 ntBASIC6.22□□□□□ -1.41
RNF4P78317 RNA5SP155-201ENST00000411154 129 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC068533.2-201ENST00000411872 306 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL589794.1-201ENST00000424971 390 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
RNF4P78317 Z93242.1-201ENST00000427102 353 ntBASIC6.22□□□□□ -1.41
RNF4P78317 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 AC091390.2-201ENST00000432573 374 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 ELOCP10-201ENST00000440624 327 ntBASIC6.22□□□□□ -1.41
RNF4P78317 ANKRD30BP3-201ENST00000444850 1070 ntBASIC6.22□□□□□ -1.41
RNF4P78317 CEACAMP5-201ENST00000448037 961 ntBASIC6.22□□□□□ -1.41
RNF4P78317 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC003071.1-201ENST00000451219 789 ntBASIC6.22□□□□□ -1.41
RNF4P78317 RPL26P30-201ENST00000453533 435 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL034369.1-201ENST00000453808 477 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AKR1D1P1-201ENST00000457236 936 ntBASIC6.22□□□□□ -1.41
RNF4P78317 RN7SL83P-201ENST00000468131 297 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC099340.1-201ENST00000475247 599 ntBASIC6.22□□□□□ -1.41
RNF4P78317 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 IGBP1P5-201ENST00000507524 1000 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL390198.2-201ENST00000510553 222 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC109471.1-201ENST00000511631 612 ntBASIC6.22□□□□□ -1.41
RNF4P78317 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC135983.3-201ENST00000528049 1226 ntBASIC6.22□□□□□ -1.41
RNF4P78317 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 AC008083.2-201ENST00000546707 476 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC092375.1-201ENST00000550410 637 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 AC004232.1-201ENST00000571388 208 ntBASIC6.22□□□□□ -1.41
RNF4P78317 BPTFP1-201ENST00000579209 492 ntBASIC6.22□□□□□ -1.41
RNF4P78317 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 AC091133.5-201ENST00000603088 301 ntBASIC6.22□□□□□ -1.41
RNF4P78317 ELOCP34-201ENST00000604436 327 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.22□□□□□ -1.41
RNF4P78317 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AL157786.1-207ENST00000627771 695 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC073869.7-201ENST00000640874 297 ntBASIC6.22□□□□□ -1.41
RNF4P78317 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
RNF4P78317 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 MT-RNR2-201ENST00000387347 1559 ntBASIC6.22□□□□□ -1.41
RNF4P78317 AC011447.7-201ENST00000624228 1590 ntBASIC6.22□□□□□ -1.41
RNF4P78317 MAPK10-365ENST00000641902 3825 ntBASIC6.22□□□□□ -1.41
RNF4P78317 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 AC005261.2-201ENST00000593427 4258 ntBASIC6.22□□□□□ -1.41
RNF4P78317 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.22□□□□□ -1.41
RNF4P78317 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
RNF4P78317 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.41
RNF4P78317 ASNSP6-201ENST00000592770 1618 ntBASIC6.21□□□□□ -1.41
RNF4P78317 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.41
RNF4P78317 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
RNF4P78317 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
RNF4P78317 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.21□□□□□ -1.41
RNF4P78317 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
RNF4P78317 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.21□□□□□ -1.41
RNF4P78317 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
RNF4P78317 ICE2P1-201ENST00000512800 1849 ntBASIC6.21□□□□□ -1.42
RNF4P78317 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
RNF4P78317 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 163.1 ms