Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXA1P49639 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXA1P49639 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AP005119.2-201ENST00000579735 1105 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 MIR5010-201ENST00000582846 120 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 BNIP3P32-201ENST00000600015 554 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AL606834.3-201ENST00000602615 496 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC145423.1-201ENST00000605712 336 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 OR7A19P-201ENST00000608051 733 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXA1P49639 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC091932.2-201ENST00000623014 291 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC097655.1-201ENST00000635075 318 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AL590396.4-201ENST00000636779 956 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC4.63□□□□□ -1.67
HOXA1P49639 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 OR11H2-202ENST00000641517 1085 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXA1P49639 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXA1P49639 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXA1P49639 AP000542.2-201ENST00000623199 6179 ntBASIC4.63□□□□□ -1.67
HOXA1P49639 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 AC092681.1-201ENST00000297369 291 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 RNU6-468P-201ENST00000384003 109 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 RNU6-298P-201ENST00000390888 96 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 ATP5HP3-201ENST00000396994 486 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 RN7SKP108-201ENST00000411367 328 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC010385.1-201ENST00000412374 256 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 BTF3P9-201ENST00000418784 283 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC234781.4-201ENST00000419384 244 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 THEM7P-201ENST00000419556 672 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 MTCYBP29-201ENST00000436327 1006 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 LINC00328-2P-201ENST00000436585 219 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC023141.3-201ENST00000436698 278 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.62□□□□□ -1.67
HOXA1P49639 PA2G4P6-201ENST00000438325 1197 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 SNRPFP2-201ENST00000440710 251 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 RPL7P33-201ENST00000444159 742 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 HMGB1P5-202ENST00000451497 985 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA1P49639 RPS23P2-201ENST00000463671 415 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AL157777.1-201ENST00000468100 304 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 AC098583.1-201ENST00000480875 255 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC107398.1-201ENST00000486904 505 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 NACAP5-201ENST00000509863 636 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 PRMT5P1-201ENST00000514351 598 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA1P49639 Y_RNA.717-201ENST00000517106 92 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA1P49639 BNIP3P1-201ENST00000547295 580 ntBASIC4.62□□□□□ -1.67
HOXA1P49639 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA1P49639 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms