Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC125232.1-201ENST00000452554 1408 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RNU6-769P-201ENST00000384407 104 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 MIR649-201ENST00000384843 97 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 MIR301B-201ENST00000390813 78 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 MTCO3P40-201ENST00000392516 676 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 EIF5P1-201ENST00000400019 1231 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 MIR1277-201ENST00000408536 78 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RN7SKP254-201ENST00000410685 310 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AL109913.1-201ENST00000421173 514 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RAD23BP1-201ENST00000421404 1227 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CLIC4P3-201ENST00000422221 752 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC009480.2-201ENST00000422916 432 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CYP4F34P-201ENST00000425951 481 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CLUHP1-201ENST00000435012 1190 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RPL7P11-201ENST00000437586 658 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CR391992.1-201ENST00000438601 394 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CFL1P4-201ENST00000451536 498 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC114755.1-201ENST00000453101 868 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 SNORA35.1-201ENST00000458908 128 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RN7SL325P-201ENST00000460434 283 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC021074.2-201ENST00000468434 172 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RPS10P20-201ENST00000494130 463 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 PABPC1P1-201ENST00000506347 591 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC108078.1-201ENST00000508073 725 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC104986.1-201ENST00000517978 436 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CYCSP28-201ENST00000534284 321 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LYZ-202ENST00000548839 558 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CENPUP2-201ENST00000555897 1186 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AL132640.2-202ENST00000559732 614 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 SULT1C2P2-201ENST00000562517 294 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 FRG2MP-201ENST00000613317 856 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC116165.3-201ENST00000614524 400 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 FKBP1AP4-201ENST00000631775 336 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AP000550.3-201ENST00000637734 379 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 AC099654.14-201ENST00000638599 341 ntBASIC5.52□□□□□ -1.53
CCDC140Q96MF4 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC140Q96MF4 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 UG0898H09-202ENST00000623646 7040 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC140Q96MF4 AC117529.2-201ENST00000512159 2068 ntBASIC5.51□□□□□ -1.53
CCDC140Q96MF4 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms