Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC42Q96M95 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 SSXP3-201ENST00000442971 1300 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 DHX9P1-201ENST00000436565 3076 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 SNORA66-201ENST00000384792 133 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 DUTP5-201ENST00000406790 469 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 RPS29P14-201ENST00000431518 171 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC004938.1-201ENST00000438468 308 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 RPS26P2-201ENST00000440331 348 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 OR7E125P-201ENST00000443450 846 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AL591623.2-201ENST00000449978 222 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC023141.9-201ENST00000458734 412 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC108693.1-201ENST00000496068 432 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 BTG4P1-201ENST00000510421 183 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 RNU6-1334P-201ENST00000516032 105 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC020978.7-201ENST00000575953 1187 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 SNORD95-201ENST00000579879 68 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 MIR3614-201ENST00000581261 86 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 EIF1P5-201ENST00000585002 234 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 FKBP1AP1-201ENST00000594588 318 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC004477.3-201ENST00000614061 590 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 MIR6778-201ENST00000617912 73 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC099494.2-201ENST00000623371 978 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC243960.7-201ENST00000623532 707 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC087821.1-201ENST00000623639 567 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 CASC19-264ENST00000641912 1184 ntBASIC5.28□□□□□ -1.56
CCDC42Q96M95 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC42Q96M95 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC42Q96M95 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC097461.1-201ENST00000568928 2821 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 NEAT1-202ENST00000501122 22743 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 U3.2-201ENST00000362981 210 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 RNA5SP132-201ENST00000364725 118 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 U3.35-201ENST00000408405 208 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 RPL35AP24-201ENST00000413846 330 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 AL513325.1-201ENST00000417716 1034 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 E2F6P2-201ENST00000420708 748 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC015660.5-201ENST00000623238 564 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC42Q96M95 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CCDC42Q96M95 OR4G1P-202ENST00000641173 1788 ntBASIC5.27□□□□□ -1.57
CCDC42Q96M95 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC42Q96M95 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC42Q96M95 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC42Q96M95 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
CCDC42Q96M95 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC42Q96M95 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.26□□□□□ -1.57
CCDC42Q96M95 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms