Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CLHC1Q8NHS4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.89□□□□□ -1.63
CLHC1Q8NHS4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC000123.3-201ENST00000624029 4975 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC005332.5-201ENST00000591222 2919 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC011447.7-201ENST00000624228 1590 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 SNORA67-201ENST00000384423 137 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 SNORA17A-201ENST00000391185 133 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 RPL5P19-201ENST00000404228 893 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AL139148.1-201ENST00000427122 680 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC104843.2-201ENST00000427666 297 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 RPL7L1P9-201ENST00000431298 745 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 HMGB3P9-201ENST00000441799 583 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 Z92846.1-201ENST00000456203 268 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC023141.9-201ENST00000458734 412 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 RPS4XP20-201ENST00000505751 772 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC090568.1-201ENST00000509499 856 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC133552.5-201ENST00000604266 540 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC018695.5-201ENST00000605872 315 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AP005432.2-201ENST00000608162 586 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC096586.2-201ENST00000610260 441 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC131238.1-201ENST00000617135 328 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 SNORA17.5-201ENST00000630429 132 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC135068.12-201ENST00000637370 931 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.88□□□□□ -1.63
CLHC1Q8NHS4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 SMG1P6-201ENST00000532337 2930 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 SNORA2.3-201ENST00000383920 135 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 MIR600-201ENST00000385007 98 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 RN7SKP293-201ENST00000411389 296 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC009302.1-201ENST00000417147 390 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 RPS4XP16-201ENST00000427198 791 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC092447.2-201ENST00000435487 669 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC022431.1-201ENST00000450941 438 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 MTND6P32-201ENST00000457611 483 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 RPS4XP1-201ENST00000482189 787 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 GTF2F2P1-201ENST00000511083 675 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AP006245.2-201ENST00000522004 300 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC011840.5-201ENST00000582125 771 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC087468.1-201ENST00000604365 630 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC079395.2-201ENST00000610982 737 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AL512356.3-201ENST00000623005 461 ntBASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CLHC1Q8NHS4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms