Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC007494.1-201ENST00000562293 760 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC010546.1-201ENST00000569391 485 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 RBM11P1-201ENST00000604951 799 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 AL133243.1-201ENST00000614487 366 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
USP39Q53GS9 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
USP39Q53GS9 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
USP39Q53GS9 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
USP39Q53GS9 THAP12P8-201ENST00000447914 2115 ntBASIC6.04□□□□□ -1.44
USP39Q53GS9 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
USP39Q53GS9 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC096921.2-201ENST00000561507 1916 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 ZNF876P-202ENST00000398732 1485 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 ZNF736P9Y-201ENST00000439586 1345 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC119674.1-202ENST00000641333 1860 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 AL359091.1-201ENST00000449048 1734 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC104454.1-201ENST00000421341 1401 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC005832.2-201ENST00000538921 1430 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 TTC41P-205ENST00000551270 3963 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 RNA5SP46-201ENST00000362370 120 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RNU4-75P-201ENST00000364621 146 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RNU6-207P-201ENST00000384137 107 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 MTND4LP20-201ENST00000402379 270 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AL355379.1-201ENST00000405542 640 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RAP1BP3-201ENST00000407180 549 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 SNORA79B-201ENST00000410557 148 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RNU4-72P-201ENST00000410754 173 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RNU4-22P-201ENST00000411058 166 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 LINC01881-201ENST00000416103 412 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 RPL30P16-201ENST00000419341 429 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AK4P4-201ENST00000419465 646 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AL627308.1-201ENST00000435693 821 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 RPL34P26-201ENST00000445636 354 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC108734.3-201ENST00000481241 1165 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 DEFB109A-201ENST00000482450 265 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 PPP1R11P1-201ENST00000486095 376 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 OR5H3P-201ENST00000502817 919 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC010374.1-201ENST00000503762 1237 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC6.03□□□□□ -1.44
USP39Q53GS9 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC067959.1-201ENST00000604334 379 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 OR2AS2P-201ENST00000606902 342 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AL021918.2-201ENST00000613415 194 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AL603755.1-201ENST00000619504 163 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 MIR6730-201ENST00000622213 67 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AP003400.5-201ENST00000624827 617 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
USP39Q53GS9 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.03□□□□□ -1.44
USP39Q53GS9 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms