Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.04□□□□□ -1.6
SOX2P48431 MT-RNR2-201ENST00000387347 1559 ntBASIC5.04□□□□□ -1.6
SOX2P48431 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SOX2P48431 METTL21EP-201ENST00000298105 713 ntBASIC5.04□□□□□ -1.6
SOX2P48431 SELENOWP1-201ENST00000322792 252 ntBASIC5.04□□□□□ -1.6
SOX2P48431 RN7SKP145-201ENST00000363291 303 ntBASIC5.04□□□□□ -1.6
SOX2P48431 RNU4-92P-201ENST00000363783 136 ntBASIC5.04□□□□□ -1.6
SOX2P48431 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 MIR188-201ENST00000385034 86 ntBASIC5.04□□□□□ -1.6
SOX2P48431 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SOX2P48431 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 FCF1P5-201ENST00000406490 482 ntBASIC5.04□□□□□ -1.6
SOX2P48431 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 RPSAP32-201ENST00000432681 526 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 AL022324.2-201ENST00000434827 780 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 AC092170.1-201ENST00000440211 356 ntBASIC5.04□□□□□ -1.6
SOX2P48431 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.04□□□□□ -1.6
SOX2P48431 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 OTX2P1-201ENST00000450956 354 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 PPIAP7-201ENST00000454070 489 ntBASIC5.04□□□□□ -1.6
SOX2P48431 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC022730.1-201ENST00000473114 568 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.04□□□□□ -1.6
SOX2P48431 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.04□□□□□ -1.6
SOX2P48431 SNORA3.4-201ENST00000515969 96 ntBASIC5.04□□□□□ -1.6
SOX2P48431 RNU6-1004P-201ENST00000516584 111 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 AP000620.1-201ENST00000527147 504 ntBASIC5.04□□□□□ -1.6
SOX2P48431 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX2P48431 AC009094.1-201ENST00000564443 426 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 AC007349.4-201ENST00000608114 532 ntBASIC5.04□□□□□ -1.6
SOX2P48431 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 AC015660.5-201ENST00000623238 564 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC010325.3-201ENST00000641084 394 ntBASIC5.04□□□□□ -1.6
SOX2P48431 AC119674.1-212ENST00000641155 993 ntBASIC5.04□□□□□ -1.6
SOX2P48431 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 ZNF876P-202ENST00000398732 1485 ntBASIC5.04□□□□□ -1.6
SOX2P48431 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 UGT2B26P-201ENST00000508672 1613 ntBASIC5.04□□□□□ -1.6
SOX2P48431 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX2P48431 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SOX2P48431 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SOX2P48431 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX2P48431 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 PSG10P-201ENST00000501199 1500 ntBASIC5.03□□□□□ -1.6
SOX2P48431 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SOX2P48431 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX2P48431 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX2P48431 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SOX2P48431 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX2P48431 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX2P48431 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX2P48431 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX2P48431 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX2P48431 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX2P48431 RNU6-452P-201ENST00000384406 107 ntBASIC5.03□□□□□ -1.6
SOX2P48431 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms