Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
MSX2P35548 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 RAP1BP3-201ENST00000407180 549 ntBASIC5.75□□□□□ -1.49
MSX2P35548 RN7SKP221-201ENST00000410420 301 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AL390774.1-201ENST00000411924 246 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 RPL30P16-201ENST00000419341 429 ntBASIC5.75□□□□□ -1.49
MSX2P35548 PPIAP23-201ENST00000420099 497 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 SNRPCP3-201ENST00000474888 476 ntBASIC5.75□□□□□ -1.49
MSX2P35548 RN7SL369P-201ENST00000477138 299 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC069528.1-202ENST00000482888 637 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 UGT2A3P7-201ENST00000510485 734 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 Y_RNA.710-201ENST00000516975 110 ntBASIC5.75□□□□□ -1.49
MSX2P35548 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
MSX2P35548 AC092851.1-201ENST00000535964 478 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AP001858.2-201ENST00000536213 601 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AP000619.2-201ENST00000546014 969 ntBASIC5.75□□□□□ -1.49
MSX2P35548 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 DUX4L52-201ENST00000549363 777 ntBASIC5.75□□□□□ -1.49
MSX2P35548 NBEAP1-201ENST00000554452 979 ntBASIC5.75□□□□□ -1.49
MSX2P35548 DUXAP1-201ENST00000556632 463 ntBASIC5.75□□□□□ -1.49
MSX2P35548 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.75□□□□□ -1.49
MSX2P35548 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 DYNLL1P1-201ENST00000595442 269 ntBASIC5.75□□□□□ -1.49
MSX2P35548 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 AC141002.1-201ENST00000607025 279 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 uc_338.26-201ENST00000612659 160 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC009283.1-201ENST00000615852 645 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AL158062.1-201ENST00000619632 745 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC015660.5-201ENST00000623238 564 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.75□□□□□ -1.49
MSX2P35548 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 CR381670.1-201ENST00000624291 1693 ntBASIC5.75□□□□□ -1.49
MSX2P35548 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 MTND5P24-201ENST00000438892 1767 ntBASIC5.75□□□□□ -1.49
MSX2P35548 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
MSX2P35548 Y_RNA.3-201ENST00000362331 103 ntBASIC5.74□□□□□ -1.49
MSX2P35548 RNU1-49P-201ENST00000363468 159 ntBASIC5.74□□□□□ -1.49
MSX2P35548 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 RNU6-31P-201ENST00000384388 108 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AL590084.2-201ENST00000401481 382 ntBASIC5.74□□□□□ -1.49
MSX2P35548 MRPL32P1-201ENST00000406301 247 ntBASIC5.74□□□□□ -1.49
MSX2P35548 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 RN7SKP121-201ENST00000410842 305 ntBASIC5.74□□□□□ -1.49
MSX2P35548 RN7SKP273-201ENST00000411392 314 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 AKR1B10P1-201ENST00000425765 942 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 MTATP6P13-201ENST00000438531 667 ntBASIC5.74□□□□□ -1.49
MSX2P35548 COL11A2P1-205ENST00000441798 676 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.74□□□□□ -1.49
MSX2P35548 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 AC026348.1-201ENST00000462549 1053 ntBASIC5.74□□□□□ -1.49
MSX2P35548 RPS7P7-201ENST00000463499 571 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC012123.2-201ENST00000485809 248 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.74□□□□□ -1.49
MSX2P35548 CCDC11P1-201ENST00000503137 1162 ntBASIC5.74□□□□□ -1.49
MSX2P35548 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSX2P35548 SNX18P24-201ENST00000505249 671 ntBASIC5.74□□□□□ -1.49
MSX2P35548 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms