Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HOXC9P31274 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HOXC9P31274 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.53□□□□□ -1.36
HOXC9P31274 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 RNA5SP453-201ENST00000362503 119 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 GPS2P1-201ENST00000411761 986 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 RPL12P9-201ENST00000412942 488 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 FABP7P1-201ENST00000424004 391 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 NPM1P18-201ENST00000434232 732 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HOXC9P31274 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC6.53□□□□□ -1.36
HOXC9P31274 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.53□□□□□ -1.36
HOXC9P31274 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.53□□□□□ -1.36
HOXC9P31274 RN7SL385P-201ENST00000468873 276 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 ENPP7P9-201ENST00000514456 627 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 RN7SKP92-201ENST00000517266 244 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.53□□□□□ -1.36
HOXC9P31274 AC022726.1-201ENST00000587475 207 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 FAM27B-201ENST00000610601 213 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 AP005212.4-201ENST00000614206 710 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.53□□□□□ -1.36
HOXC9P31274 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 AC007342.9-201ENST00000623877 1385 ntBASIC6.53□□□□□ -1.36
HOXC9P31274 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HOXC9P31274 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.53□□□□□ -1.36
HOXC9P31274 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
HOXC9P31274 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.52□□□□□ -1.37
HOXC9P31274 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HOXC9P31274 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
HOXC9P31274 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HOXC9P31274 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.52□□□□□ -1.37
HOXC9P31274 AC009480.2-201ENST00000422916 432 ntBASIC6.52□□□□□ -1.37
HOXC9P31274 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.52□□□□□ -1.37
HOXC9P31274 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.52□□□□□ -1.37
HOXC9P31274 TPT1P12-201ENST00000448968 492 ntBASIC6.52□□□□□ -1.37
HOXC9P31274 OR52A4P-201ENST00000472867 958 ntBASIC6.52□□□□□ -1.37
HOXC9P31274 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.52□□□□□ -1.37
HOXC9P31274 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.52□□□□□ -1.37
HOXC9P31274 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 AC015849.6-201ENST00000605454 474 ntBASIC6.52□□□□□ -1.37
HOXC9P31274 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HOXC9P31274 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
HOXC9P31274 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
HOXC9P31274 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HOXC9P31274 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HOXC9P31274 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.51□□□□□ -1.37
HOXC9P31274 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.51□□□□□ -1.37
HOXC9P31274 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 OR4K15-201ENST00000305051 1216 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 RPL32P3-201ENST00000359025 275 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 CNOT7P1-201ENST00000429006 852 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.51□□□□□ -1.37
HOXC9P31274 AC026979.1-201ENST00000492525 396 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AP000926.3-201ENST00000497201 299 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AK3P4-201ENST00000504283 583 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AC016559.2-201ENST00000510759 359 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.51□□□□□ -1.37
HOXC9P31274 AC026688.1-201ENST00000520639 1168 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 BUD31P1-201ENST00000521828 359 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
HOXC9P31274 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.51□□□□□ -1.37
HOXC9P31274 AL110118.1-201ENST00000553543 400 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AL049839.1-201ENST00000556151 657 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.51□□□□□ -1.37
HOXC9P31274 MIR4715-201ENST00000584117 79 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AC022960.2-201ENST00000616300 666 ntBASIC6.51□□□□□ -1.37
HOXC9P31274 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.51□□□□□ -1.37
HOXC9P31274 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
HOXC9P31274 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
HOXC9P31274 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.51□□□□□ -1.37
HOXC9P31274 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HOXC9P31274 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
HOXC9P31274 KARSP3-201ENST00000571212 1504 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 AC008758.3-201ENST00000507003 1829 ntBASIC6.5□□□□□ -1.37
HOXC9P31274 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms