Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 SNORD19B-201ENST00000459623 84 ntBASIC6.84□□□□□ -1.31
MSX1P28360 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 RPS10P28-201ENST00000480396 498 ntBASIC6.84□□□□□ -1.31
MSX1P28360 TAF8-207ENST00000482432 556 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 AC006390.1-201ENST00000508068 283 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AC093325.1-201ENST00000508378 326 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AC233724.10-201ENST00000510454 409 ntBASIC6.84□□□□□ -1.31
MSX1P28360 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC6.84□□□□□ -1.31
MSX1P28360 RNU6-1046P-201ENST00000516538 107 ntBASIC6.84□□□□□ -1.31
MSX1P28360 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 ATP5J2P4-201ENST00000538774 267 ntBASIC6.84□□□□□ -1.31
MSX1P28360 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 RN7SL14P-201ENST00000579715 298 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 OR5AH1P-201ENST00000595968 283 ntBASIC6.84□□□□□ -1.31
MSX1P28360 VN1R107P-201ENST00000601784 209 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 AC009248.2-201ENST00000619826 254 ntBASIC6.84□□□□□ -1.31
MSX1P28360 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.84□□□□□ -1.31
MSX1P28360 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
MSX1P28360 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.84□□□□□ -1.31
MSX1P28360 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.31
MSX1P28360 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 AC096992.2-201ENST00000609553 1684 ntBASIC6.84□□□□□ -1.32
MSX1P28360 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
MSX1P28360 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.32
MSX1P28360 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 MTND4P14-201ENST00000435799 1354 ntBASIC6.83□□□□□ -1.32
MSX1P28360 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 FOLH1B-202ENST00000529567 2145 ntBASIC6.83□□□□□ -1.32
MSX1P28360 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
MSX1P28360 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.83□□□□□ -1.32
MSX1P28360 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 AP000473.2-201ENST00000602659 1537 ntBASIC6.83□□□□□ -1.32
MSX1P28360 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.83□□□□□ -1.32
MSX1P28360 OR11H4-201ENST00000315409 1082 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RNA5SP218-201ENST00000363188 109 ntBASIC6.83□□□□□ -1.32
MSX1P28360 Y_RNA.133-201ENST00000363428 110 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RNA5SP302-201ENST00000364896 100 ntBASIC6.83□□□□□ -1.32
MSX1P28360 SNORD42.2-201ENST00000365570 69 ntBASIC6.83□□□□□ -1.32
MSX1P28360 SSX6-201ENST00000376932 562 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RNU1-39P-201ENST00000383897 165 ntBASIC6.83□□□□□ -1.32
MSX1P28360 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
MSX1P28360 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AL162578.1-201ENST00000406202 378 ntBASIC6.83□□□□□ -1.32
MSX1P28360 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.83□□□□□ -1.32
MSX1P28360 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 RNU2-62P-201ENST00000410868 191 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RN7SKP30-201ENST00000411373 334 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC6.83□□□□□ -1.32
MSX1P28360 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 AL589872.1-201ENST00000426602 288 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AL158073.1-201ENST00000426848 1104 ntBASIC6.83□□□□□ -1.32
MSX1P28360 PA2G4P1-201ENST00000442248 1197 ntBASIC6.83□□□□□ -1.32
MSX1P28360 FUNDC2P2-202ENST00000443452 493 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RPL31P44-201ENST00000447680 377 ntBASIC6.83□□□□□ -1.32
MSX1P28360 IGKV1OR2-2-201ENST00000451163 355 ntBASIC6.83□□□□□ -1.32
MSX1P28360 Y_RNA.639-201ENST00000458981 102 ntBASIC6.83□□□□□ -1.32
MSX1P28360 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AC090096.1-201ENST00000489168 390 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AC106800.2-201ENST00000514009 1103 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RNA5SP96-201ENST00000516041 107 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RNU6-794P-201ENST00000517261 64 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 COX6B1P4-201ENST00000519826 484 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC6.83□□□□□ -1.32
MSX1P28360 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC6.83□□□□□ -1.32
MSX1P28360 SSU72P6-201ENST00000532644 488 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 NMNAT1P1-201ENST00000554095 876 ntBASIC6.83□□□□□ -1.32
MSX1P28360 SUB1P2-201ENST00000556401 297 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms