Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 AL672167.2-201ENST00000377164 879 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC098592.2-201ENST00000413158 265 ntBASIC4.44□□□□□ -1.7
USF1P22415 RPL12P43-201ENST00000420608 499 ntBASIC4.44□□□□□ -1.7
USF1P22415 NIPA2P1-201ENST00000426223 976 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.44□□□□□ -1.7
USF1P22415 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 Z80107.2-201ENST00000445127 392 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 AC083982.1-201ENST00000485679 344 ntBASIC4.44□□□□□ -1.7
USF1P22415 AGGF1P3-201ENST00000493675 1213 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 AC021106.1-201ENST00000509020 1058 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC091912.1-201ENST00000511351 248 ntBASIC4.44□□□□□ -1.7
USF1P22415 SNORA26.10-201ENST00000516427 141 ntBASIC4.44□□□□□ -1.7
USF1P22415 SEPT10P1-201ENST00000517342 1162 ntBASIC4.44□□□□□ -1.7
USF1P22415 AP002981.1-201ENST00000517692 975 ntBASIC4.44□□□□□ -1.7
USF1P22415 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.44□□□□□ -1.7
USF1P22415 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.44□□□□□ -1.7
USF1P22415 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.44□□□□□ -1.7
USF1P22415 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 AC067838.1-201ENST00000606064 577 ntBASIC4.44□□□□□ -1.7
USF1P22415 AC008833.1-201ENST00000611633 691 ntBASIC4.44□□□□□ -1.7
USF1P22415 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 AC006206.1-201ENST00000544842 3387 ntBASIC4.44□□□□□ -1.7
USF1P22415 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
USF1P22415 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.44□□□□□ -1.7
USF1P22415 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USF1P22415 AC004817.4-201ENST00000602396 3625 ntBASIC4.44□□□□□ -1.7
USF1P22415 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.43□□□□□ -1.7
USF1P22415 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 RNU4-44P-201ENST00000363050 141 ntBASIC4.43□□□□□ -1.7
USF1P22415 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USF1P22415 SNORA79B-201ENST00000410557 148 ntBASIC4.43□□□□□ -1.7
USF1P22415 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.43□□□□□ -1.7
USF1P22415 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 RAB9AP5-201ENST00000437794 597 ntBASIC4.43□□□□□ -1.7
USF1P22415 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 RAB9AP2-201ENST00000443911 597 ntBASIC4.43□□□□□ -1.7
USF1P22415 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 AC108161.1-201ENST00000461060 402 ntBASIC4.43□□□□□ -1.7
USF1P22415 RN7SL423P-201ENST00000486202 304 ntBASIC4.43□□□□□ -1.7
USF1P22415 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.43□□□□□ -1.7
USF1P22415 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 OR8A2P-201ENST00000528631 952 ntBASIC4.43□□□□□ -1.7
USF1P22415 AC130364.2-201ENST00000528639 604 ntBASIC4.43□□□□□ -1.7
USF1P22415 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 EDDM3DP-201ENST00000554692 434 ntBASIC4.43□□□□□ -1.7
USF1P22415 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USF1P22415 AL121839.1-201ENST00000556233 1185 ntBASIC4.43□□□□□ -1.7
USF1P22415 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 AC011487.3-201ENST00000593607 453 ntBASIC4.43□□□□□ -1.7
USF1P22415 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 AL159169.2-201ENST00000610061 1269 ntBASIC4.43□□□□□ -1.7
USF1P22415 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USF1P22415 THAP12P4-201ENST00000528321 2266 ntBASIC4.43□□□□□ -1.7
USF1P22415 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
USF1P22415 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
USF1P22415 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.43□□□□□ -1.7
USF1P22415 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USF1P22415 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms