Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SLC35E1P1-201ENST00000419313 864 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AL034379.1-201ENST00000423216 253 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.77□□□□□ -1.65
SDC1P18827 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 PCNPP2-201ENST00000441651 455 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AL354714.3-201ENST00000447284 493 ntBASIC4.77□□□□□ -1.65
SDC1P18827 TCEA1P1-201ENST00000449716 880 ntBASIC4.77□□□□□ -1.65
SDC1P18827 GYG1P1-201ENST00000460864 698 ntBASIC4.77□□□□□ -1.65
SDC1P18827 RN7SL174P-201ENST00000475578 289 ntBASIC4.77□□□□□ -1.65
SDC1P18827 RN7SL799P-201ENST00000475891 298 ntBASIC4.77□□□□□ -1.65
SDC1P18827 RPS21P4-201ENST00000487122 248 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.77□□□□□ -1.65
SDC1P18827 AGGF1P3-201ENST00000493675 1213 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AC104109.1-201ENST00000498563 436 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 IGKV2-18-201ENST00000522607 343 ntBASIC4.77□□□□□ -1.65
SDC1P18827 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 AL049874.4-201ENST00000557593 255 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.77□□□□□ -1.65
SDC1P18827 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SDC1P18827 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 STX3-208ENST00000641815 3236 ntBASIC4.77□□□□□ -1.65
SDC1P18827 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.76□□□□□ -1.65
SDC1P18827 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 AC008079.2-201ENST00000623543 20396 ntBASIC4.76□□□□□ -1.65
SDC1P18827 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SDC1P18827 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SDC1P18827 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 OOSP1-201ENST00000398992 1270 ntBASIC4.76□□□□□ -1.65
SDC1P18827 RAB9AP4-201ENST00000415230 609 ntBASIC4.76□□□□□ -1.65
SDC1P18827 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.76□□□□□ -1.65
SDC1P18827 MTCO1P51-201ENST00000427672 1060 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 KNOP1P3-201ENST00000446933 426 ntBASIC4.76□□□□□ -1.65
SDC1P18827 IGHV5-78-201ENST00000450948 295 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC092647.2-201ENST00000452998 253 ntBASIC4.76□□□□□ -1.65
SDC1P18827 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.76□□□□□ -1.65
SDC1P18827 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.76□□□□□ -1.65
SDC1P18827 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 RNA5SP303-201ENST00000516192 130 ntBASIC4.76□□□□□ -1.65
SDC1P18827 IGKV3D-34-201ENST00000522638 302 ntBASIC4.76□□□□□ -1.65
SDC1P18827 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.76□□□□□ -1.65
SDC1P18827 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 AP005262.1-201ENST00000582646 997 ntBASIC4.76□□□□□ -1.65
SDC1P18827 NPM1P45-201ENST00000583151 559 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 AC105254.2-201ENST00000603636 436 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC104687.2-201ENST00000604442 342 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC067838.1-201ENST00000606064 577 ntBASIC4.76□□□□□ -1.65
SDC1P18827 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.76□□□□□ -1.65
SDC1P18827 AC126915.2-201ENST00000610957 190 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC092111.2-201ENST00000611627 1414 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AF117829.2-201ENST00000619538 361 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AC015660.5-201ENST00000623238 564 ntBASIC4.76□□□□□ -1.65
SDC1P18827 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SDC1P18827 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 AC133552.1-201ENST00000569988 4007 ntBASIC4.76□□□□□ -1.65
SDC1P18827 SMG1P4-204ENST00000523028 4131 ntBASIC4.76□□□□□ -1.65
SDC1P18827 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SDC1P18827 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.76□□□□□ -1.65
SDC1P18827 AC104260.2-201ENST00000623551 3497 ntBASIC4.76□□□□□ -1.65
SDC1P18827 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SDC1P18827 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.75□□□□□ -1.65
SDC1P18827 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.75□□□□□ -1.65
SDC1P18827 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SDC1P18827 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 AL445213.1-201ENST00000412589 747 ntBASIC4.75□□□□□ -1.65
SDC1P18827 NPM1P40-201ENST00000412758 733 ntBASIC4.75□□□□□ -1.65
SDC1P18827 TMBIM7P-201ENST00000418074 855 ntBASIC4.75□□□□□ -1.65
SDC1P18827 CHEK2P5-201ENST00000423877 246 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms