Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 TMEM30CP-203ENST00000637814 1035 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 MIR600-201ENST00000385007 98 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 SEPT7P8-201ENST00000413308 775 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 Z68694.1-201ENST00000413929 841 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 RN7SL799P-201ENST00000475891 298 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 RNA5SP92-201ENST00000516437 110 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC092709.1-201ENST00000521355 1045 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 TAS2R6P-201ENST00000605022 826 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 AL451049.1-201ENST00000608672 497 ntBASIC5.16□□□□□ -1.58
VPS35Q96QK1 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS35Q96QK1 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS35Q96QK1 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS35Q96QK1 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS35Q96QK1 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
VPS35Q96QK1 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS35Q96QK1 AC025574.1-201ENST00000554784 1653 ntBASIC5.15□□□□□ -1.58
VPS35Q96QK1 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS35Q96QK1 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS35Q96QK1 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS35Q96QK1 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS35Q96QK1 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS35Q96QK1 U3.36-201ENST00000408418 213 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 RNU4-34P-201ENST00000410431 124 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 RN7SKP126-201ENST00000411143 300 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 RN7SKP273-201ENST00000411392 314 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 HYALP1-201ENST00000417674 1279 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 FCF1P7-201ENST00000451185 558 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 BX842559.2-201ENST00000451418 605 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AURKAPS1-201ENST00000451805 1212 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC009127.1-201ENST00000467090 155 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC005532.2-201ENST00000467154 373 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 RN7SKP34-201ENST00000516142 244 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AP002981.1-201ENST00000517692 975 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS35Q96QK1 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 MTCYBP13-201ENST00000578634 1093 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC011447.4-201ENST00000587562 111 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS35Q96QK1 AC099494.2-201ENST00000623371 978 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 SAMMSON-227ENST00000642114 1199 ntBASIC5.15□□□□□ -1.59
VPS35Q96QK1 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS35Q96QK1 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS35Q96QK1 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC073136.1-201ENST00000449426 2884 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms