Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 RNU4-4P-201ENST00000364588 130 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 RNA5SP455-201ENST00000365190 119 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AL645927.1-201ENST00000396783 406 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AL035079.1-201ENST00000405210 287 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC017078.1-201ENST00000416146 368 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC097523.2-201ENST00000435551 652 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC092647.3-201ENST00000443044 633 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC091180.1-201ENST00000462104 372 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 SEPT7P6-201ENST00000469999 1143 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC004453.1-201ENST00000487895 408 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC005412.2-201ENST00000492004 341 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC010350.1-201ENST00000504908 231 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC110775.1-201ENST00000513721 462 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 MIR4691-201ENST00000583764 85 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC105254.2-201ENST00000603636 436 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AL021707.7-201ENST00000607991 416 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC068870.2-201ENST00000620635 389 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 ICE2P1-201ENST00000512800 1849 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC005261.2-201ENST00000593427 4258 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC104260.2-201ENST00000623551 3497 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC007618.1-201ENST00000366455 732 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 SNORA66-201ENST00000384792 133 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 SNORA77-201ENST00000408716 125 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 PSMD10P3-201ENST00000437000 448 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 CEACAMP7-201ENST00000444105 496 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AL354714.3-201ENST00000447284 493 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC016687.1-201ENST00000482574 353 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 COX6B1P5-201ENST00000509843 249 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 OR7E128P-201ENST00000532736 1024 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AL049874.4-201ENST00000557593 255 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC040958.1-201ENST00000561102 201 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC006272.2-201ENST00000594725 163 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 GMCL1P2-201ENST00000605230 823 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 BNIP3P41-202ENST00000616656 861 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC037198.3-201ENST00000616754 526 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 AC241377.1-201ENST00000619797 406 ntBASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.7□□□□□ -1.66
C9orf40Q8IXQ3 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
C9orf40Q8IXQ3 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
C9orf40Q8IXQ3 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
C9orf40Q8IXQ3 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.69□□□□□ -1.66
C9orf40Q8IXQ3 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.69□□□□□ -1.66
C9orf40Q8IXQ3 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms