Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 AC012409.3-201ENST00000611343 981 ntBASIC6.25□□□□□ -1.41
RNF4P78317 AC010333.3-201ENST00000615100 402 ntBASIC6.25□□□□□ -1.41
RNF4P78317 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 AC072046.2-201ENST00000618366 268 ntBASIC6.25□□□□□ -1.41
RNF4P78317 AC005514.1-201ENST00000623521 208 ntBASIC6.25□□□□□ -1.41
RNF4P78317 AC120057.5-201ENST00000623840 154 ntBASIC6.25□□□□□ -1.41
RNF4P78317 AC061999.1-201ENST00000624454 177 ntBASIC6.25□□□□□ -1.41
RNF4P78317 AC010132.4-201ENST00000569883 1368 ntBASIC6.25□□□□□ -1.41
RNF4P78317 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.25□□□□□ -1.41
RNF4P78317 AC096992.2-201ENST00000609553 1684 ntBASIC6.25□□□□□ -1.41
RNF4P78317 RACGAP1P-201ENST00000550663 1879 ntBASIC6.25□□□□□ -1.41
RNF4P78317 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.25□□□□□ -1.41
RNF4P78317 AC093278.2-201ENST00000564956 2485 ntBASIC6.25□□□□□ -1.41
RNF4P78317 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RNF4P78317 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
RNF4P78317 LYARP1-201ENST00000436977 1501 ntBASIC6.25□□□□□ -1.41
RNF4P78317 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.25□□□□□ -1.41
RNF4P78317 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
RNF4P78317 AL133243.4-201ENST00000623116 3109 ntBASIC6.24□□□□□ -1.41
RNF4P78317 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
RNF4P78317 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 TATDN2P3-201ENST00000452855 3665 ntBASIC6.24□□□□□ -1.41
RNF4P78317 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 MKI67P1-201ENST00000604297 1460 ntBASIC6.24□□□□□ -1.41
RNF4P78317 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 RNU1-5P-201ENST00000362684 144 ntBASIC6.24□□□□□ -1.41
RNF4P78317 FDPSP5-201ENST00000399474 1057 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AL590635.1-201ENST00000406314 586 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AL034374.1-201ENST00000406329 351 ntBASIC6.24□□□□□ -1.41
RNF4P78317 RPL23AP47-201ENST00000408017 460 ntBASIC6.24□□□□□ -1.41
RNF4P78317 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 RNA5SP498-201ENST00000411342 120 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 CCDC58P2-201ENST00000417131 366 ntBASIC6.24□□□□□ -1.41
RNF4P78317 Z97055.1-201ENST00000419730 712 ntBASIC6.24□□□□□ -1.41
RNF4P78317 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 AC242426.1-201ENST00000435270 960 ntBASIC6.24□□□□□ -1.41
RNF4P78317 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AL512286.1-201ENST00000439244 400 ntBASIC6.24□□□□□ -1.41
RNF4P78317 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 WASF1P1-201ENST00000447560 1131 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 FGF7P6-202ENST00000451282 293 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 BX248409.1-201ENST00000455497 255 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.24□□□□□ -1.41
RNF4P78317 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 RN7SL502P-201ENST00000481857 290 ntBASIC6.24□□□□□ -1.41
RNF4P78317 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.24□□□□□ -1.41
RNF4P78317 KRT19P6-201ENST00000510983 209 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC116347.2-201ENST00000514912 523 ntBASIC6.24□□□□□ -1.41
RNF4P78317 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
RNF4P78317 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.24□□□□□ -1.41
RNF4P78317 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 RN7SL270P-201ENST00000579643 281 ntBASIC6.24□□□□□ -1.41
RNF4P78317 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.24□□□□□ -1.41
RNF4P78317 MIR4719-201ENST00000585233 84 ntBASIC6.24□□□□□ -1.41
RNF4P78317 VN1R92P-201ENST00000598511 928 ntBASIC6.24□□□□□ -1.41
RNF4P78317 LSM1P2-201ENST00000604911 322 ntBASIC6.24□□□□□ -1.41
RNF4P78317 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC090517.2-201ENST00000614966 680 ntBASIC6.24□□□□□ -1.41
RNF4P78317 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.24□□□□□ -1.41
RNF4P78317 U4.5-201ENST00000617137 123 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC099654.15-201ENST00000639802 509 ntBASIC6.24□□□□□ -1.41
RNF4P78317 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.24□□□□□ -1.41
RNF4P78317 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.24□□□□□ -1.41
RNF4P78317 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.24□□□□□ -1.41
RNF4P78317 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RNF4P78317 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms