Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 PABPC1P6-201ENST00000445594 1829 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AL133268.1-201ENST00000405676 1401 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
FOXA1P55317 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.71□□□□□ -1.65
FOXA1P55317 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
FOXA1P55317 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 TCP1P3-201ENST00000414406 1498 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
FOXA1P55317 RNA5SP428-201ENST00000365129 132 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 RNU6-171P-201ENST00000384354 107 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 AP000580.1-201ENST00000404439 358 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 RN7SKP206-201ENST00000410823 293 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 FABP7P2-201ENST00000429946 379 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 TDGF1P1-201ENST00000445734 527 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.71□□□□□ -1.66
FOXA1P55317 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC108751.2-201ENST00000469993 231 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.71□□□□□ -1.66
FOXA1P55317 RPS18P6-201ENST00000476880 458 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 AC079841.1-201ENST00000481228 950 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 RNU6-709P-201ENST00000517257 104 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AL049839.1-201ENST00000556151 657 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC011447.4-201ENST00000587562 111 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 MEMO1P5-201ENST00000604810 406 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.71□□□□□ -1.66
FOXA1P55317 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.71□□□□□ -1.66
FOXA1P55317 AC012414.7-202ENST00000622705 1090 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.71□□□□□ -1.66
FOXA1P55317 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
FOXA1P55317 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.71□□□□□ -1.66
FOXA1P55317 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
FOXA1P55317 ZNF652P1-201ENST00000442420 1309 ntBASIC4.71□□□□□ -1.66
FOXA1P55317 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
FOXA1P55317 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
FOXA1P55317 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
FOXA1P55317 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 RNU1-83P-201ENST00000363426 164 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AC004938.1-201ENST00000438468 308 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 CNOT7P2-201ENST00000441051 832 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AURKAPS1-201ENST00000451805 1212 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AL445433.1-201ENST00000457507 257 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 RN7SL172P-201ENST00000460535 303 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 RN7SL97P-201ENST00000486780 299 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 RN7SL244P-201ENST00000493405 297 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.7□□□□□ -1.66
FOXA1P55317 AC093249.4-201ENST00000564755 259 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 TVP23CP2-201ENST00000571473 623 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.7□□□□□ -1.66
FOXA1P55317 AC006363.1-201ENST00000603806 463 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AP000894.4-201ENST00000610185 483 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 AL356752.1-201ENST00000615844 593 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 BNIP3P41-202ENST00000616656 861 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.7□□□□□ -1.66
FOXA1P55317 MIR4302-201ENST00000638058 60 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
FOXA1P55317 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
FOXA1P55317 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 THAP12P4-201ENST00000528321 2266 ntBASIC4.7□□□□□ -1.66
FOXA1P55317 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
FOXA1P55317 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.7□□□□□ -1.66
FOXA1P55317 DHX9P1-201ENST00000436565 3076 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
FOXA1P55317 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.69□□□□□ -1.66
FOXA1P55317 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
FOXA1P55317 MTCO1P7-201ENST00000419523 1542 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 RPL23P2-201ENST00000320371 421 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 ARL4AP5-201ENST00000404372 599 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 NMNAT1P2-201ENST00000435192 860 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AL137845.2-201ENST00000444292 988 ntBASIC4.69□□□□□ -1.66
FOXA1P55317 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.69□□□□□ -1.66
FOXA1P55317 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms