Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC027308.1-201ENST00000517993 110 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.99□□□□□ -1.61
SHMT2P34897 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.99□□□□□ -1.61
SHMT2P34897 AC044860.2-201ENST00000561005 179 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.99□□□□□ -1.61
SHMT2P34897 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.99□□□□□ -1.61
SHMT2P34897 BNIP3P35-201ENST00000604530 490 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC4.99□□□□□ -1.61
SHMT2P34897 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SHMT2P34897 CASC19-255ENST00000641733 1385 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SHMT2P34897 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 MIPEPP2-201ENST00000422560 1819 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 THAP12P4-201ENST00000528321 2266 ntBASIC4.99□□□□□ -1.61
SHMT2P34897 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.99□□□□□ -1.61
SHMT2P34897 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SHMT2P34897 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 SNURFL-201ENST00000309296 343 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 RNU1-106P-201ENST00000384382 164 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 RPL10P10-201ENST00000403509 664 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 RN7SKP114-201ENST00000410327 279 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.98□□□□□ -1.61
SHMT2P34897 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 AC009238.2-201ENST00000431026 355 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 RPL34P6-201ENST00000432390 345 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.98□□□□□ -1.61
SHMT2P34897 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.98□□□□□ -1.61
SHMT2P34897 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.98□□□□□ -1.61
SHMT2P34897 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 KNOP1P3-201ENST00000446933 426 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC073850.1-201ENST00000449243 255 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC092647.2-201ENST00000452998 253 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC020779.1-201ENST00000478757 796 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.98□□□□□ -1.61
SHMT2P34897 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.98□□□□□ -1.61
SHMT2P34897 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.98□□□□□ -1.61
SHMT2P34897 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.98□□□□□ -1.61
SHMT2P34897 AC013701.1-201ENST00000522657 465 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC022616.2-201ENST00000523185 300 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AC006349.1-201ENST00000555526 235 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 AC037198.3-201ENST00000616754 526 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 MIR6719-201ENST00000622428 87 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 AP002799.1-201ENST00000623552 423 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SHMT2P34897 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.98□□□□□ -1.61
SHMT2P34897 CASC19-221ENST00000641309 1382 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SHMT2P34897 CDY11P-201ENST00000447168 1651 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 DDX18P6-201ENST00000450119 1997 ntBASIC4.98□□□□□ -1.61
SHMT2P34897 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SHMT2P34897 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SHMT2P34897 NXF4-202ENST00000416098 1465 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 RN7SKP74-201ENST00000362849 309 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SHMT2P34897 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SHMT2P34897 AL390316.1-201ENST00000406279 553 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 PCNPP4-201ENST00000414817 517 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 RN7SL443P-201ENST00000464331 290 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.97□□□□□ -1.61
SHMT2P34897 RPL7AP6-201ENST00000477943 801 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 AC090114.3-201ENST00000479267 829 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.97□□□□□ -1.61
SHMT2P34897 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 AC006272.2-201ENST00000594725 163 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 AC022960.2-201ENST00000616300 666 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 AC015660.5-201ENST00000623238 564 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.97□□□□□ -1.61
SHMT2P34897 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 2480.3 ms