Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 RCC2P2-201ENST00000422174 918 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC073464.3-201ENST00000422564 712 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AL354692.1-201ENST00000423044 315 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AJ239321.1-201ENST00000424255 564 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC5.94□□□□□ -1.46
CIITAP33076 AC239798.3-201ENST00000454459 408 ntBASIC5.94□□□□□ -1.46
CIITAP33076 C1DP3-201ENST00000455013 423 ntBASIC5.94□□□□□ -1.46
CIITAP33076 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CIITAP33076 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 GTF2F2P1-201ENST00000511083 675 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC010374.2-201ENST00000512933 535 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.94□□□□□ -1.46
CIITAP33076 RNU6-319P-201ENST00000516025 108 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC022832.1-201ENST00000530718 645 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.94□□□□□ -1.46
CIITAP33076 AL158211.1-201ENST00000566763 763 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.94□□□□□ -1.46
CIITAP33076 AC005776.1-201ENST00000603164 290 ntBASIC5.94□□□□□ -1.46
CIITAP33076 AL671309.1-201ENST00000603750 544 ntBASIC5.94□□□□□ -1.46
CIITAP33076 SDR42E1P1-201ENST00000611327 477 ntBASIC5.94□□□□□ -1.46
CIITAP33076 MIR6839-201ENST00000620425 113 ntBASIC5.94□□□□□ -1.46
CIITAP33076 SAMMSON-227ENST00000642114 1199 ntBASIC5.94□□□□□ -1.46
CIITAP33076 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.94□□□□□ -1.46
CIITAP33076 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CIITAP33076 AC109780.1-201ENST00000451768 1344 ntBASIC5.94□□□□□ -1.46
CIITAP33076 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
CIITAP33076 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CIITAP33076 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.94□□□□□ -1.46
CIITAP33076 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
CIITAP33076 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 AC023421.1-201ENST00000590535 1785 ntBASIC5.93□□□□□ -1.46
CIITAP33076 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.93□□□□□ -1.46
CIITAP33076 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 U8.4-201ENST00000363626 134 ntBASIC5.93□□□□□ -1.46
CIITAP33076 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CIITAP33076 RNU1-74P-201ENST00000384108 171 ntBASIC5.93□□□□□ -1.46
CIITAP33076 OR8V1P-201ENST00000395193 873 ntBASIC5.93□□□□□ -1.46
CIITAP33076 U3.36-201ENST00000408418 213 ntBASIC5.93□□□□□ -1.46
CIITAP33076 DPPA2P3-201ENST00000411853 655 ntBASIC5.93□□□□□ -1.46
CIITAP33076 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 RPS27AP6-201ENST00000427962 448 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AL161722.2-201ENST00000434731 981 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 MYO5BP2-201ENST00000449815 1277 ntBASIC5.93□□□□□ -1.46
CIITAP33076 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 MTND6P32-201ENST00000457611 483 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AC108751.3-201ENST00000461814 1020 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AC110749.1-201ENST00000462007 357 ntBASIC5.93□□□□□ -1.46
CIITAP33076 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.93□□□□□ -1.46
CIITAP33076 AP001804.2-201ENST00000533932 910 ntBASIC5.93□□□□□ -1.46
CIITAP33076 HAUS8P1-201ENST00000549005 542 ntBASIC5.93□□□□□ -1.46
CIITAP33076 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.93□□□□□ -1.46
CIITAP33076 MIR4760-201ENST00000585040 80 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AC011447.4-201ENST00000587562 111 ntBASIC5.93□□□□□ -1.46
CIITAP33076 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 AP006248.3-201ENST00000623580 594 ntBASIC5.93□□□□□ -1.46
CIITAP33076 AC135068.12-201ENST00000637370 931 ntBASIC5.93□□□□□ -1.46
CIITAP33076 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.93□□□□□ -1.46
CIITAP33076 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 OR10AB1P-202ENST00000641219 1686 ntBASIC5.93□□□□□ -1.46
CIITAP33076 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CIITAP33076 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.93□□□□□ -1.46
CIITAP33076 ABCC13-202ENST00000463099 3842 ntBASIC5.93□□□□□ -1.46
CIITAP33076 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.93□□□□□ -1.46
CIITAP33076 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CIITAP33076 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.92□□□□□ -1.46
CIITAP33076 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
CIITAP33076 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CIITAP33076 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CIITAP33076 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CIITAP33076 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.92□□□□□ -1.46
CIITAP33076 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CIITAP33076 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CIITAP33076 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.92□□□□□ -1.46
CIITAP33076 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CIITAP33076 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms