Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MIR7641-1-201ENST00000627518 61 ntBASIC5.33□□□□□ -1.56
HOXA9P31269 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA9P31269 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA9P31269 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA9P31269 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
HOXA9P31269 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA9P31269 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 SCARNA15-201ENST00000607520 4325 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AC079741.1-201ENST00000321498 212 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 SNORA70.6-201ENST00000383934 134 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 EI24P3-201ENST00000399046 1062 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 HMGB3P7-201ENST00000400214 611 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 RNA5SP113-201ENST00000410486 84 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 RNU2-22P-201ENST00000411266 212 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AC016397.1-201ENST00000412463 242 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 DEFB109A-201ENST00000482450 265 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 RN7SL346P-201ENST00000491561 294 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 AC021733.2-201ENST00000518830 497 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.32□□□□□ -1.56
HOXA9P31269 AC079075.1-201ENST00000559543 878 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA9P31269 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.32□□□□□ -1.56
HOXA9P31269 AL162574.1-201ENST00000615702 950 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA9P31269 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA9P31269 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA9P31269 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA9P31269 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 AC011503.2-201ENST00000594230 1500 ntBASIC5.32□□□□□ -1.56
HOXA9P31269 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HOXA9P31269 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA9P31269 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA9P31269 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXA9P31269 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXA9P31269 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HOXA9P31269 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HOXA9P31269 RNU6-398P-201ENST00000384143 109 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 RAB28P1-201ENST00000411517 641 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA9P31269 AC019050.1-201ENST00000418508 492 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 AC009238.2-201ENST00000431026 355 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 IGHV5-78-201ENST00000450948 295 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXA9P31269 AC010350.1-201ENST00000504908 231 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA9P31269 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXA9P31269 OR7H2P-201ENST00000513483 306 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA9P31269 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA9P31269 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXA9P31269 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 AL451049.1-201ENST00000608672 497 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 OR8G7P-201ENST00000616658 848 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 AL122125.1-201ENST00000616999 600 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 AP000346.3-201ENST00000622821 210 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA9P31269 MAPK10-263ENST00000641052 4307 ntBASIC5.31□□□□□ -1.56
HOXA9P31269 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA9P31269 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
HOXA9P31269 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms