Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNORA71.2-201ENST00000364941 134 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 AL354868.1-201ENST00000417077 482 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 QRSL1P2-201ENST00000418582 964 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.07□□□□□ -1.44
COL5A3P25940 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.07□□□□□ -1.44
COL5A3P25940 RPL7AP10-201ENST00000481016 791 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.07□□□□□ -1.44
COL5A3P25940 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.07□□□□□ -1.44
COL5A3P25940 MIR3138-201ENST00000585238 82 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.07□□□□□ -1.44
COL5A3P25940 AC093388.1-201ENST00000609166 430 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 AL049794.2-201ENST00000616301 365 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 U3.53-201ENST00000628922 216 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL5A3P25940 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL5A3P25940 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.06□□□□□ -1.44
COL5A3P25940 NOL8P1-201ENST00000508336 3529 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
COL5A3P25940 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 ARL4AP5-201ENST00000404372 599 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.06□□□□□ -1.44
COL5A3P25940 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.06□□□□□ -1.44
COL5A3P25940 MTND2P28-201ENST00000457540 1044 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 RPL23AP24-201ENST00000458203 385 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 RN7SL817P-201ENST00000480777 288 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 AC111000.6-201ENST00000514471 709 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.06□□□□□ -1.44
COL5A3P25940 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.06□□□□□ -1.44
COL5A3P25940 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.06□□□□□ -1.44
COL5A3P25940 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.06□□□□□ -1.44
COL5A3P25940 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.06□□□□□ -1.44
COL5A3P25940 AC040958.1-201ENST00000561102 201 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.06□□□□□ -1.44
COL5A3P25940 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 AL021877.2-201ENST00000624442 10684 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 SALL4P2-201ENST00000423288 2910 ntBASIC6.06□□□□□ -1.44
COL5A3P25940 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL5A3P25940 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A3P25940 AC093829.1-201ENST00000506662 1618 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A3P25940 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 OR6C69P-201ENST00000394268 893 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 ST13P16-201ENST00000401760 781 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 GPS2P1-201ENST00000411761 986 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 RPL12P9-201ENST00000412942 488 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 RPL7P32-201ENST00000457119 744 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 RNA5SP464-201ENST00000516251 108 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A3P25940 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.05□□□□□ -1.44
COL5A3P25940 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.05□□□□□ -1.44
COL5A3P25940 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 STX3-208ENST00000641815 3236 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 AC120338.1-201ENST00000625074 1541 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 RN7SKP27-201ENST00000410684 333 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A3P25940 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A3P25940 RPS27AP12-201ENST00000429552 465 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A3P25940 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A3P25940 AC239367.2-201ENST00000447309 705 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 MTND4LP2-201ENST00000502312 285 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 HNRNPRP2-201ENST00000528421 743 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.05□□□□□ -1.44
COL5A3P25940 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A3P25940 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 AC093765.1-201ENST00000603758 881 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AC243960.7-201ENST00000623532 707 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A3P25940 SAMMSON-210ENST00000641260 1308 ntBASIC6.05□□□□□ -1.44
COL5A3P25940 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A3P25940 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 AC025574.1-201ENST00000554784 1653 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A3P25940 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A3P25940 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A3P25940 OR14L1P-202ENST00000641545 3009 ntBASIC6.04□□□□□ -1.44
COL5A3P25940 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms