Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG1P18858 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG1P18858 AC079753.1-201ENST00000623243 3868 ntBASIC7.22□□□□□ -1.25
LIG1P18858 SMG1P5-202ENST00000529428 4219 ntBASIC7.22□□□□□ -1.25
LIG1P18858 SMG1P2-201ENST00000566127 4221 ntBASIC7.22□□□□□ -1.25
LIG1P18858 AC132825.1-201ENST00000463573 2247 ntBASIC7.21□□□□□ -1.25
LIG1P18858 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
LIG1P18858 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIG1P18858 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC7.21□□□□□ -1.25
LIG1P18858 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC7.21□□□□□ -1.25
LIG1P18858 AC092724.1-201ENST00000624623 3397 ntBASIC7.21□□□□□ -1.25
LIG1P18858 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG1P18858 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG1P18858 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG1P18858 RNU1-59P-201ENST00000364829 162 ntBASIC7.21□□□□□ -1.26
LIG1P18858 RNA5SP485-201ENST00000365053 119 ntBASIC7.21□□□□□ -1.26
LIG1P18858 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 Y_RNA.516-201ENST00000384541 124 ntBASIC7.21□□□□□ -1.26
LIG1P18858 YWHAZP4-201ENST00000392459 708 ntBASIC7.21□□□□□ -1.26
LIG1P18858 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 AL391422.1-201ENST00000402155 436 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 OR2B8P-201ENST00000432841 938 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG1P18858 OR13K1P-201ENST00000444577 975 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG1P18858 TPMTP4-201ENST00000450749 678 ntBASIC7.21□□□□□ -1.26
LIG1P18858 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 CTSLP6-201ENST00000458273 1002 ntBASIC7.21□□□□□ -1.26
LIG1P18858 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC7.21□□□□□ -1.26
LIG1P18858 AC011825.1-201ENST00000484967 388 ntBASIC7.21□□□□□ -1.26
LIG1P18858 DSTNP2-201ENST00000504533 515 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG1P18858 HIGD1AP10-201ENST00000527837 282 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG1P18858 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AC090651.1-201ENST00000567865 634 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC7.21□□□□□ -1.26
LIG1P18858 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 MIR3157-201ENST00000578688 85 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC027229.1-201ENST00000583887 253 ntBASIC7.21□□□□□ -1.26
LIG1P18858 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.21□□□□□ -1.26
LIG1P18858 SUMO2P14-201ENST00000604488 293 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC073046.2-201ENST00000604756 527 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC100767.2-201ENST00000604840 693 ntBASIC7.21□□□□□ -1.26
LIG1P18858 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 AC131235.4-201ENST00000609288 620 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AL365181.4-201ENST00000609800 547 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC107075.1-201ENST00000613695 314 ntBASIC7.21□□□□□ -1.26
LIG1P18858 U1.25-201ENST00000614085 162 ntBASIC7.21□□□□□ -1.26
LIG1P18858 U1.31-201ENST00000620022 160 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG1P18858 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 AL592429.1-201ENST00000403909 1473 ntBASIC7.21□□□□□ -1.26
LIG1P18858 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.21□□□□□ -1.26
LIG1P18858 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG1P18858 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG1P18858 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG1P18858 AC096921.2-201ENST00000561507 1916 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AP001541.1-201ENST00000623322 1904 ntBASIC7.21□□□□□ -1.26
LIG1P18858 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG1P18858 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
LIG1P18858 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG1P18858 AC125238.2-201ENST00000430003 1440 ntBASIC7.2□□□□□ -1.26
LIG1P18858 AL158152.1-201ENST00000602652 1435 ntBASIC7.2□□□□□ -1.26
LIG1P18858 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG1P18858 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG1P18858 FAM3C2-201ENST00000312214 681 ntBASIC7.2□□□□□ -1.26
LIG1P18858 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
LIG1P18858 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG1P18858 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG1P18858 NACA3P-201ENST00000359690 648 ntBASIC7.2□□□□□ -1.26
LIG1P18858 RNU1-84P-201ENST00000365447 164 ntBASIC7.2□□□□□ -1.26
LIG1P18858 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG1P18858 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG1P18858 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
LIG1P18858 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG1P18858 RPS26P38-201ENST00000414476 348 ntBASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 150.2 ms