Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 RNA5SP72-201ENST00000364442 117 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 MT-RNR1-201ENST00000389680 954 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.91□□□□□ -1.62
COL6A3P12111 HCG14-201ENST00000444986 413 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A3P12111 AC096754.1-201ENST00000508904 818 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A3P12111 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A3P12111 MIR5195-201ENST00000583555 115 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A3P12111 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 AL590065.1-201ENST00000603371 4774 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.9□□□□□ -1.62
COL6A3P12111 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A3P12111 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A3P12111 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 SNORA70.10-201ENST00000384515 134 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 RPL23AP38-201ENST00000423801 469 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 RPL12P46-201ENST00000436610 195 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.9□□□□□ -1.62
COL6A3P12111 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.9□□□□□ -1.62
COL6A3P12111 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.9□□□□□ -1.62
COL6A3P12111 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.9□□□□□ -1.62
COL6A3P12111 RN7SL652P-201ENST00000577769 300 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.9□□□□□ -1.62
COL6A3P12111 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 AL133243.1-201ENST00000614487 366 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 RLIMP1-201ENST00000339626 1680 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A3P12111 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC4.9□□□□□ -1.62
COL6A3P12111 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
COL6A3P12111 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A3P12111 AC245060.6-201ENST00000624350 8420 ntBASIC4.9□□□□□ -1.62
COL6A3P12111 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A3P12111 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 MIR200C-201ENST00000384980 68 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A3P12111 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 AC115621.1-201ENST00000604653 858 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 RNU4-89P-201ENST00000607443 133 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 AL359757.2-201ENST00000624309 274 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 ZNF285B-201ENST00000561698 1767 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A3P12111 OR52E6-202ENST00000379946 954 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 MIR183-201ENST00000384958 110 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 TMSB10P2-201ENST00000416049 131 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A3P12111 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A3P12111 MRPS21P3-201ENST00000436696 262 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 AC079922.1-201ENST00000443291 359 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 AC037471.2-201ENST00000564941 598 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A3P12111 BNIP3P35-201ENST00000604530 490 ntBASIC4.9□□□□□ -1.63
COL6A3P12111 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A3P12111 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A3P12111 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A3P12111 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 RNU1-83P-201ENST00000363426 164 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 Y_RNA.510-201ENST00000384511 114 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 RPL7P2-201ENST00000427639 268 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 AC074250.1-201ENST00000511117 192 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 AC010487.1-201ENST00000594408 1172 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 AP001002.2-201ENST00000625137 386 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 OR7E122P-202ENST00000641144 6171 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 AC002525.1-201ENST00000624392 1622 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A3P12111 ZNF137P-201ENST00000456718 1920 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms