Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS4BO75351 RN7SKP279-201ENST00000411383 298 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC130360.1-201ENST00000425489 1117 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC099677.3-201ENST00000427081 395 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 RPS6P15-201ENST00000431996 751 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS4BO75351 AL590004.3-202ENST00000445883 451 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 HMGN1P36-201ENST00000446623 298 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 CFL1P4-201ENST00000451536 498 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 GTF2IP12-201ENST00000456547 356 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC023141.9-201ENST00000458734 412 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC104164.1-201ENST00000460282 590 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC011476.1-201ENST00000466725 307 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC130365.2-201ENST00000525882 1201 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS4BO75351 RPA2P1-201ENST00000556557 721 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC016839.1-201ENST00000578162 867 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 AL513327.3-201ENST00000602618 469 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 AC211433.2-201ENST00000608433 387 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 uc_338.26-201ENST00000612659 160 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 AC073488.3-201ENST00000631611 778 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 FRG1EP-201ENST00000634469 770 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS4BO75351 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
VPS4BO75351 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
VPS4BO75351 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS4BO75351 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
VPS4BO75351 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS4BO75351 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS4BO75351 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS4BO75351 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS4BO75351 AC015799.1-201ENST00000622996 3122 ntBASIC5.76□□□□□ -1.49
VPS4BO75351 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS4BO75351 AL161912.4-201ENST00000623889 2468 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AP001284.1-201ENST00000528393 2118 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS4BO75351 RBPJP7-201ENST00000442803 1447 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 RBPJP5-201ENST00000449433 1447 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 DDX18P6-201ENST00000450119 1997 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC004076.2-201ENST00000620532 3323 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS4BO75351 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS4BO75351 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 OR52B3P-201ENST00000314715 928 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS4BO75351 RNA5SP477-201ENST00000362639 119 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 U3.25-201ENST00000391209 220 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AL034403.1-201ENST00000399414 885 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS4BO75351 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS4BO75351 OR2X1P-201ENST00000421144 687 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC006065.1-201ENST00000422539 802 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC015983.1-201ENST00000441577 373 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 TRIM60P16-201ENST00000444048 694 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 RPL36AP39-201ENST00000445859 318 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 YWHAEP1-201ENST00000453697 763 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS4BO75351 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC082651.2-201ENST00000496833 166 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS4BO75351 RN7SKP141-201ENST00000516167 338 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 SNORA31.13-201ENST00000516624 135 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 TMEM97P2-201ENST00000517841 403 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC013701.1-201ENST00000522657 465 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS4BO75351 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC126615.2-201ENST00000553003 515 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS4BO75351 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS4BO75351 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS4BO75351 AC023824.3-201ENST00000569003 562 ntBASIC5.75□□□□□ -1.49
VPS4BO75351 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms