Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 TERF1P5-201ENST00000477545 1207 ntBASIC17.84■□□□□ 0.45
DDX28Q9NUL7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 FAM21FP-204ENST00000608637 956 ntBASIC17.84■□□□□ 0.45
DDX28Q9NUL7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 AC092437.1-201ENST00000624794 1048 ntBASIC17.84■□□□□ 0.45
DDX28Q9NUL7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
DDX28Q9NUL7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.83■□□□□ 0.45
DDX28Q9NUL7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 AC099778.1-201ENST00000568593 1911 ntBASIC17.83■□□□□ 0.44
DDX28Q9NUL7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 FER1L4-210ENST00000615531 5998 ntBASIC17.83■□□□□ 0.44
DDX28Q9NUL7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.83■□□□□ 0.44
DDX28Q9NUL7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 ID1-201ENST00000376105 1233 ntBASIC17.82■□□□□ 0.44
DDX28Q9NUL7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.82■□□□□ 0.44
DDX28Q9NUL7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AC007322.4-201ENST00000509611 723 ntBASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AL162412.1-201ENST00000567129 965 ntBASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.82■□□□□ 0.44
DDX28Q9NUL7 KRT8P36-201ENST00000489121 1440 ntBASIC17.81■□□□□ 0.44
DDX28Q9NUL7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms