Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 AC116562.4-202ENST00000641738 218 ntBASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.83■■□□□ 1.72
USHBP1Q8N6Y0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USHBP1Q8N6Y0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC25.81■■□□□ 1.72
USHBP1Q8N6Y0 AC092338.2-201ENST00000568827 1415 ntBASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 AL512408.1-201ENST00000569378 2000 ntBASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 AL358472.4-201ENST00000633140 710 ntBASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC25.8■■□□□ 1.72
USHBP1Q8N6Y0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 YBX1P2-201ENST00000489612 999 ntBASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.79■■□□□ 1.72
USHBP1Q8N6Y0 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 AL691432.2-201ENST00000607222 2038 ntBASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 CCR12P-201ENST00000446203 998 ntBASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 AL160286.2-201ENST00000567150 934 ntBASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 AL023803.3-201ENST00000615559 522 ntBASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 MYC-208ENST00000641036 567 ntBASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
USHBP1Q8N6Y0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 SLC25A1P2-201ENST00000430693 912 ntBASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
USHBP1Q8N6Y0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC25.77■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms