Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 HLA-B-256ENST00000639848 1089 ntBASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 AC138932.1-201ENST00000534164 6830 ntBASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 AC090192.1-201ENST00000517740 490 ntBASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC40Q4G0X9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 AC087289.5-201ENST00000586076 3175 ntBASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 AC083880.1-201ENST00000608266 535 ntBASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 AL020996.1-203ENST00000536896 2307 ntBASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC40Q4G0X9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
CCDC40Q4G0X9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CCDC40Q4G0X9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 PNMA6B-201ENST00000538162 1200 ntBASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AC060766.5-201ENST00000590539 871 ntBASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC40Q4G0X9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms