Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.24■■□□□ 1.31
SCN4AP35499 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.24■■□□□ 1.31
SCN4AP35499 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.24■■□□□ 1.31
SCN4AP35499 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.24■■□□□ 1.31
SCN4AP35499 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
SCN4AP35499 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.24■■□□□ 1.31
SCN4AP35499 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.24■■□□□ 1.31
SCN4AP35499 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SCN4AP35499 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 DPP3P2-201ENST00000416030 1696 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 KRT18P1-202ENST00000452408 1331 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.23■■□□□ 1.31
SCN4AP35499 AC016734.2-201ENST00000624325 1377 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.23■■□□□ 1.31
SCN4AP35499 KRT8P41-201ENST00000533985 1514 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
SCN4AP35499 AP002383.4-201ENST00000442518 975 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.23■■□□□ 1.31
SCN4AP35499 AL160237.2-201ENST00000556165 472 ntBASIC23.23■■□□□ 1.31
SCN4AP35499 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.23■■□□□ 1.31
SCN4AP35499 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.23■■□□□ 1.31
SCN4AP35499 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SCN4AP35499 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
SCN4AP35499 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.22■■□□□ 1.31
SCN4AP35499 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 WDR6-223ENST00000627177 207 ntTSL 2 BASIC23.22■■□□□ 1.31
SCN4AP35499 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 AC121338.2-201ENST00000622535 1744 ntBASIC23.22■■□□□ 1.31
SCN4AP35499 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC23.22■■□□□ 1.31
SCN4AP35499 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
SCN4AP35499 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC23.22■■□□□ 1.31
SCN4AP35499 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SCN4AP35499 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.21■■□□□ 1.31
SCN4AP35499 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.21■■□□□ 1.31
SCN4AP35499 AC093525.10-201ENST00000625130 1569 ntBASIC23.21■■□□□ 1.31
SCN4AP35499 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SCN4AP35499 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.21■■□□□ 1.31
SCN4AP35499 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SCN4AP35499 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC23.21■■□□□ 1.31
SCN4AP35499 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SCN4AP35499 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SCN4AP35499 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.31
SCN4AP35499 BX119927.1-201ENST00000636596 1552 ntBASIC23.2■■□□□ 1.31
SCN4AP35499 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.2■■□□□ 1.31
SCN4AP35499 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SCN4AP35499 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SCN4AP35499 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.2■■□□□ 1.3
SCN4AP35499 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC23.2■■□□□ 1.3
SCN4AP35499 AC106795.1-205ENST00000512851 1056 ntBASIC23.2■■□□□ 1.3
SCN4AP35499 AC012615.1-201ENST00000565797 1299 ntBASIC23.2■■□□□ 1.3
SCN4AP35499 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.2■■□□□ 1.3
SCN4AP35499 AC244015.2-201ENST00000616358 1861 ntBASIC23.2■■□□□ 1.3
SCN4AP35499 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.19■■□□□ 1.3
SCN4AP35499 TSSC2-201ENST00000450217 709 ntBASIC23.19■■□□□ 1.3
SCN4AP35499 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SCN4AP35499 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
SCN4AP35499 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.19■■□□□ 1.3
SCN4AP35499 AC120114.3-201ENST00000611923 658 ntBASIC23.19■■□□□ 1.3
SCN4AP35499 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.19■■□□□ 1.3
SCN4AP35499 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SCN4AP35499 C9orf163-202ENST00000624034 2573 ntBASIC23.19■■□□□ 1.3
SCN4AP35499 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
SCN4AP35499 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC23.19■■□□□ 1.3
SCN4AP35499 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.19■■□□□ 1.3
SCN4AP35499 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SCN4AP35499 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN4AP35499 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN4AP35499 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN4AP35499 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN4AP35499 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN4AP35499 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN4AP35499 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SCN4AP35499 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms