Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC005377.1-201ENST00000605126 456 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC107952.2-201ENST00000606048 486 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AL035661.1-201ENST00000620459 1144 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC010435.1-201ENST00000623353 1177 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC009120.7-201ENST00000623452 780 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 FRG1EP-201ENST00000634469 770 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 DNM1P47-203ENST00000571780 12667 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC011503.2-201ENST00000594230 1500 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 AC114786.1-201ENST00000512892 1415 ntBASIC5.99□□□□□ -1.45
TDP1Q9NUW8 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 GTF2IP4-201ENST00000453092 2054 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 IMMTP1-201ENST00000435590 2219 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RNU4-68P-201ENST00000364314 141 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MCTS2P-201ENST00000394552 546 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 BRWD1P3-201ENST00000428816 390 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MTND5P25-201ENST00000430499 799 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC012075.1-201ENST00000436549 580 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 PTGES3P1-201ENST00000439531 483 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 HSPE1P22-201ENST00000456856 327 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AL133445.1-201ENST00000467051 452 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RN7SL570P-201ENST00000484405 292 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RN7SL184P-201ENST00000488308 297 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AP000563.1-201ENST00000490865 758 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RNA5SP116-201ENST00000516132 98 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 IGHV3-63-201ENST00000518422 341 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MRPS36P3-201ENST00000519284 130 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 IGLV2-28-201ENST00000520681 304 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 NRBF2P4-201ENST00000520874 850 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 SUMO2P15-201ENST00000604285 278 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC025588.2-201ENST00000604851 466 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC011374.2-201ENST00000607135 526 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 U6.48-201ENST00000618523 106 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC123767.1-202ENST00000620407 817 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AL731532.1-201ENST00000623972 4236 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AC123769.1-201ENST00000530992 3192 ntBASIC5.98□□□□□ -1.45
TDP1Q9NUW8 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
TDP1Q9NUW8 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 CASC19-248ENST00000641674 1356 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 MFSD8-219ENST00000641228 2559 ntBASIC5.97□□□□□ -1.45
TDP1Q9NUW8 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
TDP1Q9NUW8 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms