Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC007786.3-201ENST00000615154 596 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.69□□□□□ -1.5
USP41Q3LFD5 AC138965.3-201ENST00000623875 498 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 AC006453.5-201ENST00000636451 619 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
USP41Q3LFD5 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.69□□□□□ -1.5
USP41Q3LFD5 AC023421.1-201ENST00000590535 1785 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 AC003985.2-201ENST00000562268 1669 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 AC104964.3-201ENST00000606115 2860 ntBASIC5.69□□□□□ -1.5
USP41Q3LFD5 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP41Q3LFD5 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP41Q3LFD5 DDX6P1-205ENST00000441966 1436 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 DDX18P6-201ENST00000450119 1997 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AC103591.2-201ENST00000265259 766 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 RNU4-4P-201ENST00000364588 130 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 MIR421-201ENST00000365696 85 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 SNORD56.6-201ENST00000384569 71 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 DBIP1-201ENST00000401435 260 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AL109941.1-201ENST00000401925 229 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 RBMY2KP-201ENST00000418221 992 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 AC104634.1-201ENST00000452720 462 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AK4P6-201ENST00000505168 528 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 AL136520.1-202ENST00000555494 763 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 OR1F2P-201ENST00000570470 933 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AP000769.2-201ENST00000602344 396 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 AC009597.2-201ENST00000604659 592 ntBASIC5.68□□□□□ -1.5
USP41Q3LFD5 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.68□□□□□ -1.5
USP41Q3LFD5 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 MAPK10-328ENST00000641553 4009 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 CCNB2P1-201ENST00000399411 1150 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 CHMP1B2P-201ENST00000399581 597 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AL357078.2-201ENST00000416486 427 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AL121878.1-201ENST00000418638 859 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 LINC02210-201ENST00000444561 288 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 RPL35AP28-201ENST00000459730 331 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 RNU6-491P-201ENST00000516099 110 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AP001922.4-201ENST00000526967 290 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC134349.2-201ENST00000535136 910 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 MIR4436B2-201ENST00000581415 91 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 MIR4436B1-201ENST00000583272 91 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 QTRT1P1-201ENST00000604344 1078 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 AC068446.1-201ENST00000556425 1549 ntBASIC5.67□□□□□ -1.5
USP41Q3LFD5 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP41Q3LFD5 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP41Q3LFD5 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms