Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.41□□□□□ -1.86
PRKDCP78527 AC007688.1-201ENST00000475592 759 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.41□□□□□ -1.86
PRKDCP78527 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 AL121950.1-201ENST00000624993 2077 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AC126323.6-202ENST00000568092 3511 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 VN2R3P-201ENST00000422626 1412 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 AL451142.1-201ENST00000375867 775 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 SNORA70.10-201ENST00000384515 134 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 SCAND3P1-201ENST00000439854 1060 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.41□□□□□ -1.86
PRKDCP78527 RN7SL558P-201ENST00000497468 299 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.41□□□□□ -1.86
PRKDCP78527 AL133243.1-201ENST00000614487 366 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 MON2-214ENST00000641654 10382 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 EPHB2-204ENST00000400191 10816 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 AC079097.1-201ENST00000512187 1399 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 MIR383-201ENST00000362257 73 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 RN7SL189P-201ENST00000468631 289 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC3.41□□□□□ -1.86
PRKDCP78527 AP005205.1-201ENST00000563503 508 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.41□□□□□ -1.86
PRKDCP78527 AL391261.4-201ENST00000616012 481 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AL022401.1-201ENST00000619498 108 ntBASIC3.41□□□□□ -1.86
PRKDCP78527 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC3.4□□□□□ -1.86
PRKDCP78527 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
PRKDCP78527 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
PRKDCP78527 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
PRKDCP78527 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
PRKDCP78527 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC3.4□□□□□ -1.86
PRKDCP78527 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC3.4□□□□□ -1.86
PRKDCP78527 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.4□□□□□ -1.86
PRKDCP78527 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.4□□□□□ -1.86
PRKDCP78527 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC3.4□□□□□ -1.86
PRKDCP78527 AC053481.4-201ENST00000583164 216 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 BNIP3P35-201ENST00000604530 490 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 AC073137.1-201ENST00000605636 634 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 AC010424.2-201ENST00000607594 443 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 TLK1P1-201ENST00000456760 2440 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
PRKDCP78527 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKDCP78527 OR14L1P-202ENST00000641545 3009 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 AC018628.1-201ENST00000624147 3819 ntBASIC3.4□□□□□ -1.86
PRKDCP78527 NOL8P1-201ENST00000508336 3529 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.4□□□□□ -1.87
PRKDCP78527 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKDCP78527 NDUFB4P8-201ENST00000435351 367 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 MRPS21P3-201ENST00000436696 262 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 LINC02210-201ENST00000444561 288 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 AC006326.1-201ENST00000445465 787 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC022360.1-201ENST00000521058 340 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKDCP78527 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC084757.4-201ENST00000616350 526 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 OTUD7B-202ENST00000581312 8872 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms