Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NMNAT1P1-201ENST00000554095 876 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.74□□□□□ -1.65
FOXA1P55317 OR8G7P-201ENST00000616658 848 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.74□□□□□ -1.65
FOXA1P55317 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
FOXA1P55317 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 AL034370.1-201ENST00000397254 1590 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.73□□□□□ -1.65
FOXA1P55317 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 AC139426.3-201ENST00000605648 2059 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC023632.6-201ENST00000624338 2177 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
FOXA1P55317 RNA5SP455-201ENST00000365190 119 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.73□□□□□ -1.65
FOXA1P55317 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 TBCAP2-201ENST00000416175 326 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AL031584.1-201ENST00000447169 754 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC4.73□□□□□ -1.65
FOXA1P55317 RN7SL222P-201ENST00000476452 299 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC090114.3-201ENST00000479267 829 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 MRPS33P2-201ENST00000507850 322 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC011411.1-201ENST00000509592 876 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 RN7SKP260-201ENST00000516907 149 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC068993.1-201ENST00000546724 589 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC125612.1-201ENST00000547580 377 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 AC012146.2-201ENST00000576545 416 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 MIR4691-201ENST00000583764 85 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.73□□□□□ -1.65
FOXA1P55317 IMMP1LP1-201ENST00000605170 488 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC008115.4-201ENST00000619780 775 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC015804.1-201ENST00000622935 435 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.73□□□□□ -1.65
FOXA1P55317 AC008758.3-201ENST00000507003 1829 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.73□□□□□ -1.65
FOXA1P55317 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 CASC19-281ENST00000642118 1554 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 AC093849.1-201ENST00000563631 2209 ntBASIC4.73□□□□□ -1.65
FOXA1P55317 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
FOXA1P55317 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.72□□□□□ -1.65
FOXA1P55317 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC027279.1-201ENST00000568885 4284 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
FOXA1P55317 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.72□□□□□ -1.65
FOXA1P55317 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 AL391361.1-201ENST00000405580 489 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 MIR1286-201ENST00000408112 78 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 U3.35-201ENST00000408405 208 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 U3.36-201ENST00000408418 213 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 RNA5SP345-201ENST00000410646 108 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 EIF4A1P1-201ENST00000420241 934 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 NDUFA5P8-201ENST00000449019 346 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AL606490.1-201ENST00000452266 765 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC112206.1-201ENST00000468416 477 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.72□□□□□ -1.65
FOXA1P55317 SNRPCP2-201ENST00000504370 475 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 ATP5LP3-201ENST00000514223 304 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AC020937.1-201ENST00000519677 1013 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
FOXA1P55317 OOSP1P2-201ENST00000579644 351 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 RNF138P2-201ENST00000603490 592 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AC087783.2-201ENST00000605070 562 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AP000864.1-201ENST00000609424 650 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AC019206.1-201ENST00000621938 425 ntBASIC4.72□□□□□ -1.65
FOXA1P55317 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.72□□□□□ -1.65
FOXA1P55317 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.72□□□□□ -1.65
FOXA1P55317 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
FOXA1P55317 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
FOXA1P55317 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms