Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.07□□□□□ -1.6
SOX2P48431 GAPDHP62-201ENST00000515313 990 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX2P48431 AC027369.2-201ENST00000528030 440 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.07□□□□□ -1.6
SOX2P48431 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX2P48431 OSBPL9P5-201ENST00000542581 171 ntBASIC5.07□□□□□ -1.6
SOX2P48431 MTCYBP27-201ENST00000555160 670 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX2P48431 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.07□□□□□ -1.6
SOX2P48431 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX2P48431 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX2P48431 AC015802.2-201ENST00000589690 189 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX2P48431 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX2P48431 AL451064.1-201ENST00000607718 471 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AC084782.3-201ENST00000612282 578 ntBASIC5.07□□□□□ -1.6
SOX2P48431 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.07□□□□□ -1.6
SOX2P48431 AL121895.2-201ENST00000619558 447 ntBASIC5.07□□□□□ -1.6
SOX2P48431 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX2P48431 AC078883.4-201ENST00000623218 367 ntBASIC5.07□□□□□ -1.6
SOX2P48431 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 OR11H2-202ENST00000641517 1085 ntBASIC5.07□□□□□ -1.6
SOX2P48431 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SOX2P48431 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX2P48431 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX2P48431 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX2P48431 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX2P48431 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX2P48431 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX2P48431 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 RNU4-51P-201ENST00000364206 140 ntBASIC5.06□□□□□ -1.6
SOX2P48431 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 RNU6-244P-201ENST00000391028 104 ntBASIC5.06□□□□□ -1.6
SOX2P48431 U3.23-201ENST00000391132 200 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 RN7SKP278-201ENST00000410504 342 ntBASIC5.06□□□□□ -1.6
SOX2P48431 RN7SKP108-201ENST00000411367 328 ntBASIC5.06□□□□□ -1.6
SOX2P48431 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 GTF2IP2-201ENST00000424290 697 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 VN1R21P-201ENST00000426703 765 ntBASIC5.06□□□□□ -1.6
SOX2P48431 MGAT2P2-201ENST00000427194 797 ntBASIC5.06□□□□□ -1.6
SOX2P48431 USP9YP11-201ENST00000427537 717 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC023141.3-201ENST00000436698 278 ntBASIC5.06□□□□□ -1.6
SOX2P48431 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 TRIM60P16-201ENST00000444048 694 ntBASIC5.06□□□□□ -1.6
SOX2P48431 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 OR2AF1P-201ENST00000454899 889 ntBASIC5.06□□□□□ -1.6
SOX2P48431 SEPT7P3-201ENST00000455017 621 ntBASIC5.06□□□□□ -1.6
SOX2P48431 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 AC005410.1-202ENST00000460347 485 ntBASIC5.06□□□□□ -1.6
SOX2P48431 RN7SL552P-201ENST00000462094 276 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC021205.1-201ENST00000468797 348 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX2P48431 RPS4XP17-201ENST00000479057 754 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC004815.1-201ENST00000484185 331 ntBASIC5.06□□□□□ -1.6
SOX2P48431 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AP002453.1-201ENST00000492327 668 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 HMGN1P16-201ENST00000508308 283 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC105384.2-201ENST00000508433 640 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC138866.2-201ENST00000508650 584 ntBASIC5.06□□□□□ -1.6
SOX2P48431 GUSBP9-201ENST00000510138 584 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX2P48431 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 AC007834.2-201ENST00000536310 343 ntBASIC5.06□□□□□ -1.6
SOX2P48431 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX2P48431 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX2P48431 HMGN1P26-201ENST00000558737 303 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.06□□□□□ -1.6
SOX2P48431 AC008088.1-201ENST00000580993 280 ntBASIC5.06□□□□□ -1.6
SOX2P48431 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX2P48431 AL080312.2-201ENST00000613001 630 ntBASIC5.06□□□□□ -1.6
SOX2P48431 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX2P48431 MIR6883-201ENST00000614952 78 ntBASIC5.06□□□□□ -1.6
SOX2P48431 OR8G7P-201ENST00000616658 848 ntBASIC5.06□□□□□ -1.6
SOX2P48431 FRG1HP-204ENST00000617940 757 ntBASIC5.06□□□□□ -1.6
SOX2P48431 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SOX2P48431 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms