Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 METTL15-211ENST00000634762 718 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC011447.7-201ENST00000624228 1590 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 C4BPAP1-201ENST00000415474 1893 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC092747.4-201ENST00000620519 1861 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AL590763.1-201ENST00000398297 1545 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 LINC01355-201ENST00000566551 5444 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 RNU6-171P-201ENST00000384354 107 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 MIR223-201ENST00000385204 110 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 VDAC2P1-201ENST00000399358 958 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 RNU4-34P-201ENST00000410431 124 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 BMS1P13-201ENST00000417301 885 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 BRWD1P3-201ENST00000428816 390 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 FAM96AP1-201ENST00000430879 482 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 AL627308.1-201ENST00000435693 821 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 DNAJB5P1-201ENST00000454004 806 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 RPL7P40-201ENST00000481703 745 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 UBA52P7-201ENST00000486088 380 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 HIGD1AP14-201ENST00000507617 282 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 ATG10-208ENST00000513634 618 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 RNA5SP92-201ENST00000516437 110 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC211433.2-201ENST00000608433 387 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC108359.1-201ENST00000616451 1211 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 CCT5-215ENST00000625723 135 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HLA-DMBP28068 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AC235565.1-201ENST00000456962 1325 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
HLA-DMBP28068 PABPC1P6-201ENST00000445594 1829 ntBASIC3.91□□□□□ -1.78
HLA-DMBP28068 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
HLA-DMBP28068 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HLA-DMBP28068 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
HLA-DMBP28068 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
HLA-DMBP28068 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
HLA-DMBP28068 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HLA-DMBP28068 OR55B1P-203ENST00000641518 2602 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HLA-DMBP28068 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HLA-DMBP28068 RNA5SP90-201ENST00000364801 99 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HLA-DMBP28068 BMS1P3-201ENST00000372011 932 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HLA-DMBP28068 RNU1-74P-201ENST00000384108 171 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 MIR105-2-201ENST00000385083 81 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 OR8V1P-201ENST00000395193 873 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 SEPT7P2-202ENST00000398921 823 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL390774.1-201ENST00000411924 246 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 SLC35E1P1-201ENST00000419313 864 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC3.9□□□□□ -1.79
HLA-DMBP28068 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL161722.2-201ENST00000434731 981 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL450263.2-201ENST00000439400 589 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 RPL7AP61-201ENST00000443410 636 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC3.9□□□□□ -1.79
HLA-DMBP28068 CYCSP24-201ENST00000445119 316 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 RPS26P41-201ENST00000450370 284 ntBASIC3.9□□□□□ -1.79
HLA-DMBP28068 RN7SL172P-201ENST00000460535 303 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms