Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ELP2-203ENST00000358232 8459 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A3P12111 GLUD1P9-201ENST00000420997 1173 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 MRPL48P1-201ENST00000445390 636 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A3P12111 MTND4LP2-201ENST00000502312 285 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A3P12111 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.93□□□□□ -1.62
COL6A3P12111 AL133481.2-203ENST00000607558 139 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A3P12111 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 ADAMTS20-201ENST00000389420 6076 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 AC105342.1-201ENST00000378334 6848 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
COL6A3P12111 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC4.93□□□□□ -1.62
COL6A3P12111 AC140479.2-201ENST00000421567 3130 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
COL6A3P12111 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL6A3P12111 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC4.93□□□□□ -1.62
COL6A3P12111 AC023818.1-201ENST00000498379 384 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 RN7SKP157-201ENST00000516174 282 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 PAICSP4-201ENST00000517543 1253 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.93□□□□□ -1.62
COL6A3P12111 AL513477.2-201ENST00000607858 568 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 AC099669.2-201ENST00000616549 437 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A3P12111 RPS29P7-201ENST00000439662 171 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A3P12111 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A3P12111 RNF10P1-201ENST00000418589 369 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 RN7SKP289-201ENST00000517244 295 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 FAM27B-201ENST00000610601 213 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 AC140113.4-201ENST00000622087 222 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 AL139254.3-201ENST00000641097 674 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 AC025574.1-201ENST00000554784 1653 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
COL6A3P12111 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A3P12111 MITF-203ENST00000328528 4680 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 AL035246.1-201ENST00000433554 1255 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A3P12111 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A3P12111 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A3P12111 AC010424.2-201ENST00000607594 443 ntBASIC4.92□□□□□ -1.62
COL6A3P12111 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A3P12111 OR4D9-202ENST00000641278 6063 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A3P12111 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 AP001029.2-203ENST00000589795 4910 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 ATP5A1P4-201ENST00000556888 1605 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 RNA5SP22-201ENST00000365393 109 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL6A3P12111 RNU1-82P-201ENST00000390851 165 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 AL590704.1-201ENST00000402856 794 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 AL445687.2-201ENST00000458156 728 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 RPS27AP1-201ENST00000475545 471 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 RN7SL691P-201ENST00000494487 301 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 MIR5699-201ENST00000578903 90 ntBASIC4.91□□□□□ -1.62
COL6A3P12111 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL6A3P12111 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A3P12111 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A3P12111 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A3P12111 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A3P12111 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A3P12111 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms