Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC068792.1-201ENST00000621354 417 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 MIR8080-201ENST00000622224 89 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 FRG1DP-201ENST00000635586 771 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.58□□□□□ -1.36
COL6A1P12109 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL6A1P12109 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL6A1P12109 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 UGT2B24P-201ENST00000514441 1597 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AP000866.6-201ENST00000638898 3579 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL6A1P12109 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 RNA5SP333-201ENST00000363466 118 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 RNA5SP334-201ENST00000364825 118 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.57□□□□□ -1.36
COL6A1P12109 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 HMGB1P49-201ENST00000418882 569 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 NMD3P2-201ENST00000421815 761 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 FO393414.1-201ENST00000428697 1184 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 GSTA7P-201ENST00000438425 448 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 AL157884.3-201ENST00000448273 1184 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 RPL21P18-201ENST00000469899 480 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 AC079841.1-201ENST00000481228 950 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AC134050.1-201ENST00000495088 933 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 OR2A20P-203ENST00000498397 1268 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.57□□□□□ -1.36
COL6A1P12109 BUD31P1-201ENST00000521828 359 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 MRPS16P1-201ENST00000523462 412 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 AC061975.8-201ENST00000587058 721 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AC119403.2-201ENST00000590960 598 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 SUGT1P3-202ENST00000604259 383 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 Z82195.1-201ENST00000604558 398 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AC107952.2-201ENST00000606048 486 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.57□□□□□ -1.36
COL6A1P12109 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 AC090897.3-201ENST00000636973 1157 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 UGT2B27P-201ENST00000505092 1620 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.57□□□□□ -1.36
COL6A1P12109 AC011815.2-201ENST00000618230 2021 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 AC092692.1-201ENST00000623625 2595 ntBASIC6.57□□□□□ -1.36
COL6A1P12109 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL6A1P12109 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.57□□□□□ -1.36
COL6A1P12109 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 SUCLA2P2-201ENST00000417269 1309 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 Y_RNA.436-201ENST00000384097 102 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
COL6A1P12109 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 AL136131.1-201ENST00000406079 803 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC002524.1-201ENST00000411687 547 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 RPL35AP24-201ENST00000413846 330 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.56□□□□□ -1.36
COL6A1P12109 SEPT2P1-201ENST00000419651 180 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 AC093422.3-201ENST00000428506 305 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms